myRT

myRT report for GCA_005777235.1_ASM577723v1

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Seq: SXND01000083.1 (80303 bp)
Overview 1 RT 1: 29795-34772 bp 2 RT 2: 58091-62761 bp Neighborhood of RT #1 [29795, 34772] DUF111 InsQ RVT_N RVT-GII InsQ Neighborhood of RT #2 [58091, 63183] SpoIIIAA R3H_AAA YfmG RVT-DGRs Avd_like HTH_17 Feature: gene Location: 29795-31003 bp Feature: domain Description: DUF111 Location: 29810-30947 bp Feature: domain Description: DUF1 1 1 Location: 2981 0-30947 bp Feature: gene Location: 31096-31833 bp Feature: domain Description: InsQ Location: 31258-31810 bp Feature: domain Description: InsQ Location: 31 258-31 81 0 bp Feature: gene Location: 32579-33415 bp Feature: domain Description: RVT_N Location: 32621-32861 bp Feature: domain Description: RVT_N Location: 32621 -32861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32915-33350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3291 5-33350 bp Feature: gene Location: 34006-34623 bp Feature: domain Description: InsQ Location: 34093-34555 bp Feature: domain Description: InsQ Location: 34093-34555 bp Feature: gene Location: 34626-34772 bp Feature: gene Location: 58091-59632 bp Feature: domain Description: SpoIIIAA Location: 58121-58958 bp Feature: domain Description: SpoIIIAA Location: 581 21 -58958 bp Feature: domain Description: R3H_AAA Location: 59453-59627 bp Feature: domain Description: R3H_AAA Location: 59453-59627 bp Feature: gene Location: 59705-60721 bp Feature: domain Description: YfmG Location: 59969-60689 bp Feature: domain Description: YfmG Location: 59969-60689 bp Feature: gene Location: 60846-61835 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61059-61701 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 059-61 701 bp Feature: gene Location: 62270-62632 bp Feature: domain Description: Avd_like Location: 62315-62603 bp Feature: domain Description: Avd_like Location: 6231 5-62603 bp Feature: gene Location: 62629-63183 bp Feature: domain Description: HTH_17 Location: 62638-62761 bp Feature: domain Description: HTH_1 7 Location: 62638-62761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF111 (pfam01969), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, SpoIIIAA (COG3854), R3H_AAA (cd02645), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), HTH_17 (pfam12728)

Seq: SXND01000029.1 (7102 bp)
Overview 1 RT 1: 3016-6879 bp Neighborhood of RT #1 [3016, 6887] DDE_Tnp_IS66 RVT-DGRs Avd_like pfam03781 Feature: gene Location: 3016-3207 bp Feature: gene Location: 3565-3813 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3574-3676 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3574-3676 bp Feature: gene Location: 4354-5487 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4561-5206 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4561-52 06 bp Feature: gene Location: 5484-5837 bp Feature: domain Description: Avd_like Location: 5511-5817 bp Feature: domain Description: Avd_like Location: 5511-5817 bp Feature: gene Location: 5946-6887 bp Feature: domain Description: pfam03781 Location: 6114-6879 bp Feature: domain Description: pfam03781 Location: 6114-6879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: SXND01000129.1 (32548 bp)
Overview 1 RT 1: 2113-3584 bp Neighborhood of RT #1 [2113, 3643] RVT-DGRs Avd_like HRDC Feature: gene Location: 2113-2268 bp Feature: gene Location: 2277-2426 bp Feature: gene Location: 2445-2762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2451-2727 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2451-2727 bp Feature: gene Location: 2791-3144 bp Feature: domain Description: Avd_like Location: 2827-3130 bp Feature: domain Description: Avd_like Location: 2827-3 13 0 bp Feature: gene Location: 3137-3643 bp Feature: domain Description: HRDC Location: 3392-3584 bp Feature: domain Description: HRDC Location: 3 3 92-3 584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: SXND01000112.1 (6597 bp)
Overview 1 RT 1: 822-4494 bp Neighborhood of RT #1 [822, 4505] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR MazF Feature: gene Location: 822-1094 bp Feature: domain Description: Cas2_I_II_III Location: 834-1056 bp Feature: domain Description: Cas2_I_II_III Location: 834 -1056 bp Feature: gene Location: 1106-2095 bp Feature: domain Description: Cas1_I-II-III Location: 1115-2060 bp Feature: domain Description: Cas1_I-II-III Location: 1115-2060 bp Feature: gene Location: 2059-3072 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2281-2899 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2281-2899 bp Feature: gene Location: 3273-4199 bp Feature: gene Location: 4245-4505 bp Feature: domain Description: MazF Location: 4251-4494 bp Feature: domain Description: MazF Location: 4 251-4 4 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, MazF (COG2337)

Seq: SXND01000234.1 (70269 bp)
Overview 1 RT 1: 62072-64979 bp Neighborhood of RT #1 [62072, 65041] YfmG HigA RVT-DGRs Avd_like HRDC Feature: gene Location: 62072-62461 bp Feature: domain Description: YfmG Location: 62135-62288 bp Feature: domain Description: YfmG Location: 62135 -62288 bp Feature: gene Location: 62745-63095 bp Feature: domain Description: HigA Location: 62781-63087 bp Feature: domain Description: HigA Location: 62781-63087 bp Feature: gene Location: 63197-64192 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63407-64004 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63407-64004 bp Feature: gene Location: 64189-64545 bp Feature: domain Description: Avd_like Location: 64222-64528 bp Feature: domain Description: Avd_like Location: 64222-645 28 bp Feature: gene Location: 64526-65041 bp Feature: domain Description: HRDC Location: 64784-64979 bp Feature: domain Description: HRDC Location: 64784-64979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HigA (COG5499), RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)