myRT

myRT report for GCA_005792815.1_ASM579281v1

Download annotations/find similar RTs

Seq: SXQU01000285.1 Proteobacteria bacterium isolate F1-140-MAGs038 F1-140__c372217, whole genome shotgun sequence (12517 bp)
Overview 1 RT 1: 270-2583 bp Neighborhood of RT #1 [270, 2618] RVT-GII RVT-GII Cas2_I_II_III Cas1_I-II-III Feature: gene Location: 270-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 0-1 053 bp Feature: gene Location: 1300-1578 bp Feature: domain Description: Cas2_I_II_III Location: 1312-1534 bp Feature: domain Description: Cas2_I_II_III Location: 1 31 2-1 534 bp Feature: gene Location: 1578-2618 bp Feature: domain Description: Cas1_I-II-III Location: 1593-2583 bp Feature: domain Description: Cas1 _I-II-III Location: 1 593-2583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)

Seq: SXQU01000341.1 Proteobacteria bacterium isolate F1-140-MAGs038 F1-140__c469373, whole genome shotgun sequence (6885 bp)
Overview 1 RT 1: 3152-6885 bp Neighborhood of RT #1 [3152, 6884] COG4185 RVT-Retrons YqeY PccA Feature: gene Location: 3152-3352 bp Feature: gene Location: 3349-3975 bp Feature: domain Description: COG4185 Location: 3358-3916 bp Feature: domain Description: COG4185 Location: 3358-3916 bp Feature: gene Location: 4576-5610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5005-5305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5005-5305 bp Feature: gene Location: 5574-6023 bp Feature: domain Description: YqeY Location: 5592-6015 bp Feature: domain Description: YqeY Location: 5592 -6015 bp Feature: gene Location: 6027-6884 bp Feature: domain Description: PccA Location: 6030-6885 bp Feature: domain Description: PccA Location: 6030-6885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4185 (Predicted ABC-type ATPase ), RVT-Retrons, YqeY (pfam09424), PccA (COG4770)