myRT

myRT report for GCA_005798335.1_ASM579833v1

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Seq: SYJV01000068.1 (14766 bp)
Overview 1 RT 1: 74-7822 bp Neighborhood of RT #1 [74, 8553] TolB TolB TolB M28_like_PA_PDZ_associated PDZ_serine_protease CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cmr1 Cmr1 Feature: gene Location: 74-3202 bp Feature: domain Description: TolB Location: 290-512 bp Feature: domain Description: TolB Location: 290-51 2 bp Feature: domain Description: TolB Location: 599-905 bp Feature: domain Description: TolB Location: 599-905 bp Feature: domain Description: TolB Location: 926-1205 bp Feature: domain Description: TolB Location: 926-1 205 bp Feature: domain Description: M28_like_PA_PDZ_associated Location: 1361-2870 bp Feature: domain Description: M28_like_PA_PDZ_associated Location: 1 361 -2870 bp Feature: domain Description: PDZ_serine_protease Location: 2975-3182 bp Feature: domain Description: PDZ_serine_protease Location: 2975-31 82 bp Feature: gene Location: 3529-3828 bp Feature: gene Location: 3914-6784 bp Feature: domain Description: CRISPR_Cas6 Location: 4445-4799 bp Feature: domain Description: CRISPR_Cas6 Location: 4445-4799 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4991-5555 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4991 -5555 bp Feature: domain Description: Cas1_I-II-III Location: 5771-6683 bp Feature: domain Description: Cas1 _I-II-III Location: 5771 -6683 bp Feature: gene Location: 6827-7135 bp Feature: gene Location: 7228-8553 bp Feature: domain Description: Cmr1 Location: 7255-7480 bp Feature: domain Description: Cmr1 Location: 7255-7480 bp Feature: domain Description: Cmr1 Location: 7723-7822 bp Feature: domain Description: Cmr1 Location: 7723-7822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TolB (COG0823), M28_like_PA_PDZ_associated (cd05663), PDZ_serine_protease (cd00987), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr1 (COG1367)

Seq: SYJV01000241.1 (8207 bp)
Overview 1 RT 1: 3-4388 bp Neighborhood of RT #1 [3, 4390] RVT-Retrons sulfatase_like BBP7 Feature: gene Location: 3-236 bp Feature: gene Location: 368-1816 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 938-1571 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 938-1571 bp Feature: gene Location: 2206-2661 bp Feature: domain Description: sulfatase_like Location: 2209-2635 bp Feature: domain Description: sulfatase_like Location: 2 2 09-2 635 bp Feature: gene Location: 2729-4390 bp Feature: domain Description: BBP7 Location: 3350-4388 bp Feature: domain Description: BBP7 Location: 3350-4388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, sulfatase_like (cd16156), BBP7 (pfam07585)

Seq: SYJV01000181.1 (34285 bp)
Overview 1 RT 1: 14937-23048 bp Neighborhood of RT #1 [14937, 23048] GH38N_AMII_like RVT-GII PRK05192 Feature: gene Location: 14937-17864 bp Feature: domain Description: GH38N_AMII_like Location: 15624-15990 bp Feature: domain Description: GH3 8N_AMII_like Location: 15624-15990 bp Feature: gene Location: 17894-18031 bp Feature: gene Location: 18286-18687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18292-18532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18292-1853 2 bp Feature: gene Location: 18874-20703 bp Feature: domain Description: PRK05192 Location: 18892-20695 bp Feature: domain Description: PRK05192 Location: 18892-20695 bp Feature: gene Location: 21069-23048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH38N_AMII_like (cd10786), RVT-GII, PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG)

Seq: SYJV01000281.1 (3724 bp)
Overview 1 RT 1: 1-3152 bp Neighborhood of RT #1 [1, 3340] dnaG RVT-GII GIIM RVT-GII KOG1550 SEL1 Feature: gene Location: 1-282 bp Feature: domain Description: dnaG Location: 34-208 bp Feature: domain Description: dnaG Location: 34 -208 bp Feature: gene Location: 397-1278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 12-889 bp Feature: domain Description: GIIM Note: maturase Location: 973-1183 bp Feature: domain Description: GIIM Note: maturase Location: 973-1183 bp Feature: gene Location: 1239-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1761-1968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1761-1968 bp Feature: gene Location: 2000-2227 bp Feature: gene Location: 2369-3340 bp Feature: domain Description: KOG1550 Location: 2465-2966 bp Feature: domain Description: KOG1550 Location: 24 65-2966 bp Feature: domain Description: SEL1 Location: 3080-3152 bp Feature: domain Description: SEL1 Location: 3080-3152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-GII, GIIM (pfam08388), KOG1550 (KOG1550, Extracellular protein SEL-1 and related proteins ), SEL1 (smart00671)

Seq: SYJV01000128.1 (10250 bp)
Overview 1 RT 1: 6278-10204 bp Neighborhood of RT #1 [6278, 10204] DUF1501 DUF1501 RVT-CRISPR-like GIIM Feature: gene Location: 6278-7723 bp Feature: domain Description: DUF1501 Location: 6467-7715 bp Feature: domain Description: DUF15 01 Location: 6467-7715 bp Feature: gene Location: 7748-9274 bp Feature: domain Description: DUF1501 Location: 8054-9269 bp Feature: domain Description: DUF15 01 Location: 805 4-9269 bp Feature: gene Location: 9457-10086 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9484-9721 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9484-9721 bp Feature: domain Description: GIIM Note: maturase Location: 9772-10000 bp Feature: domain Description: GIIM Note: maturase Location: 9772-10000 bp Feature: gene Location: 10070-10204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1501 (pfam07394), RVT-CRISPR, GIIM (pfam08388)

Seq: SYJV01000080.1 (18587 bp)
Overview 1 RT 1: 7689-13080 bp Neighborhood of RT #1 [7689, 13080] DUF1501 DDE_Tnp_1 RVT-GII GIIM Feature: gene Location: 7689-9098 bp Feature: domain Description: DUF1501 Location: 7845-9093 bp Feature: domain Description: DUF1501 Location: 7845-9093 bp Feature: gene Location: 9186-10631 bp Feature: domain Description: DDE_Tnp_1 Location: 9627-10314 bp Feature: domain Description: DDE_Tnp_1 Location: 96 27-10314 bp Feature: gene Location: 11062-12444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11470-12094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11470-12094 bp Feature: domain Description: GIIM Note: maturase Location: 12139-12364 bp Feature: domain Description: GIIM Note: maturase Location: 12139-1236 4 bp Feature: gene Location: 12463-12603 bp Feature: gene Location: 12856-13080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1501 (pfam07394), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)