myRT

myRT report for GCA_005804365.1_ASM580436v1

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Seq: SYOD01000066.1 Methylococcaceae bacterium isolate F1-80-MAGs140 F1-80__c147372, whole genome shotgun sequence (12537 bp)
Overview 1 RT 1: 9269-12427 bp Neighborhood of RT #1 [9269, 12427] Cas2_I_II_III Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 9269-9535 bp Feature: domain Description: Cas2_I_II_III Location: 9275-9497 bp Feature: domain Description: Cas2_I_II_III Location: 9275-9497 bp Feature: gene Location: 9547-9825 bp Feature: domain Description: Cas2_I_II_III Location: 9562-9769 bp Feature: domain Description: Cas2_I_II_III Location: 9562-9769 bp Feature: gene Location: 9822-11897 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 10035-10638 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 0035-1 0638 bp Feature: domain Description: Cas1_I-II-III Location: 10896-11862 bp Feature: domain Description: Cas1 _I-II-III Location: 1 0896-1 1 862 bp Feature: gene Location: 12029-12427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: SYOD01000213.1 Methylococcaceae bacterium isolate F1-80-MAGs140 F1-80__c484194, whole genome shotgun sequence (7370 bp)
Overview 1 RT 1: 3-2974 bp Neighborhood of RT #1 [3, 3006] RVT-Retrons Trypsin_2 COG4637 DUF4276 Feature: gene Location: 3-1184 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-2 85 bp Feature: domain Description: Trypsin_2 Location: 669-1089 bp Feature: domain Description: Trypsin_2 Location: 669-1089 bp Feature: gene Location: 1241-2428 bp Feature: domain Description: COG4637 Location: 1244-2360 bp Feature: domain Description: COG4637 Location: 12 44-2 360 bp Feature: gene Location: 2425-3006 bp Feature: domain Description: DUF4276 Location: 2458-2974 bp Feature: domain Description: DUF42 76 Location: 2 458-2 974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), COG4637 (Predicted ATPase ), DUF4276 (pfam14103)

Seq: SYOD01000032.1 Methylococcaceae bacterium isolate F1-80-MAGs140 F1-80__c82456, whole genome shotgun sequence (14545 bp)
Overview 1 RT 1: 11164-14413 bp Neighborhood of RT #1 [11164, 14421] GT4_PimA-like Glyco_tranf_GTA_type RVT-UG28b Feature: gene Location: 11164-12249 bp Feature: domain Description: GT4_PimA-like Location: 11194-12202 bp Feature: domain Description: GT4_PimA-like Location: 11194-12202 bp Feature: gene Location: 12246-13247 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 12270-12795 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 12270-12795 bp Feature: gene Location: 13390-14421 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 13888-14413 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 13 888-14413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_PimA-like (cd03801), Glyco_tranf_GTA_type (cl11394), RVT-UG28b

Seq: SYOD01000054.1 Methylococcaceae bacterium isolate F1-80-MAGs140 F1-80__c123306, whole genome shotgun sequence (10413 bp)
Overview 1 RT 1: 126-3868 bp Neighborhood of RT #1 [126, 3969] FecR TPR TPR TPR RVT-GII AAA_26 Feature: gene Location: 126-1634 bp Feature: domain Description: FecR Location: 327-600 bp Feature: domain Description: FecR Location: 327-600 bp Feature: domain Description: TPR Location: 879-1044 bp Feature: domain Description: TPR Location: 879-104 4 bp Feature: domain Description: TPR Location: 1113-1353 bp Feature: domain Description: TPR Location: 1113-1353 bp Feature: domain Description: TPR Location: 1389-1593 bp Feature: domain Description: TPR Location: 1389-1593 bp Feature: gene Location: 1872-2792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229-2703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229-2703 bp Feature: gene Location: 2920-3129 bp Feature: gene Location: 3259-3969 bp Feature: domain Description: AAA_26 Location: 3277-3868 bp Feature: domain Description: AAA_26 Location: 3277-3868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FecR (pfam04773), TPR (smart00028), RVT-GII, AAA_26 (pfam13500)