myRT

myRT report for GCA_005844705.1_ASM584470v1

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Seq: SPGN01000067.1 (27388 bp)
Overview 1 RT 1: 3868-8181 bp Neighborhood of RT #1 [3868, 8192] 2A0121 SAP RVT-Retrons RVT-Retrons FadR Feature: gene Location: 3868-5118 bp Feature: domain Description: 2A0121 Location: 3904-4993 bp Feature: domain Description: 2A01 21 Location: 3904-4993 bp Feature: gene Location: 5315-5884 bp Feature: domain Description: SAP Location: 5582-5678 bp Feature: domain Description: SAP Location: 5582-5678 bp Feature: gene Location: 6091-6423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6103-6178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 03-61 78 bp Feature: gene Location: 6446-6982 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6824-6977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6824-6977 bp Feature: gene Location: 6954-7289 bp Feature: gene Location: 7485-8192 bp Feature: domain Description: FadR Location: 7530-8181 bp Feature: domain Description: FadR Location: 7530-81 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0121 (TIGR00900), SAP (smart00513), RVT-Retrons, FadR (COG2186)

Seq: SPGN01000193.1 (1441 bp)
Overview 1 RT 1: 2-1366 bp Neighborhood of RT #1 [2, 1440] RVT-GII Feature: gene Location: 2-355 bp Feature: gene Location: 427-1440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SPGN01000073.1 (25218 bp)
Overview 1 RT 1: 4270-9806 bp Neighborhood of RT #1 [4270, 9806] pilus_cpaB Peptidase_A24 RVT-GII Intron_maturas2 Feature: gene Location: 4270-5094 bp Feature: domain Description: pilus_cpaB Location: 4306-4981 bp Feature: domain Description: pilus_cpaB Location: 43 06-4981 bp Feature: gene Location: 5110-5568 bp Feature: domain Description: Peptidase_A24 Location: 5113-5464 bp Feature: domain Description: Peptidase_A24 Location: 5113 -5464 bp Feature: gene Location: 5719-7545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5992-6823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5992-6823 bp Feature: domain Description: Intron_maturas2 Location: 6895-7201 bp Feature: domain Description: Intron_maturas2 Location: 6895-7201 bp Feature: gene Location: 7594-7788 bp Feature: gene Location: 8076-9806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pilus_cpaB (TIGR03177), Peptidase_A24 (pfam01478), RVT-GII, Intron_maturas2 (pfam01348)

Seq: SPGN01000049.1 (42447 bp)
Overview 1 RT 1: 11600-17491 bp Neighborhood of RT #1 [11600, 17592] RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type PrgI Feature: gene Location: 11600-12409 bp Feature: gene Location: 12327-12677 bp Feature: gene Location: 12786-14576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13053-13866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13053-13866 bp Feature: domain Description: Intron_maturas2 Location: 13950-14244 bp Feature: domain Description: Intron_maturas2 Location: 13950-14 24 4 bp Feature: gene Location: 15069-17216 bp Feature: domain Description: VirB4_CagE Location: 15162-15399 bp Feature: domain Description: VirB4 _CagE Location: 15162-15399 bp Feature: domain Description: TraC-F-type Location: 15837-17178 bp Feature: domain Description: TraC-F-type Location: 15837-17178 bp Feature: gene Location: 17170-17592 bp Feature: domain Description: PrgI Location: 17218-17491 bp Feature: domain Description: PrgI Location: 17218-174 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), PrgI (pfam12666)

Seq: SPGN01000100.1 (14464 bp)
Overview 1 RT 1: 238-4004 bp Neighborhood of RT #1 [238, 4171] RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 238-909 bp Feature: gene Location: 1024-1239 bp Feature: gene Location: 1485-3317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1749-2580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1749-25 80 bp Feature: domain Description: Intron_maturas2 Location: 2652-2967 bp Feature: domain Description: Intron_maturas2 Location: 265 2-2967 bp Feature: domain Description: HNHc Note: nucleases Location: 3114-3288 bp Feature: domain Description: HNHc Note: nucleases Location: 3114-3288 bp Feature: gene Location: 3393-3695 bp Feature: gene Location: 3716-4171 bp Feature: domain Description: PrgI Location: 3731-4004 bp Feature: domain Description: PrgI Location: 3731-4004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: SPGN01000111.1 (11204 bp)
Overview 1 RT 1: 2233-5658 bp Neighborhood of RT #1 [2233, 5658] DUF1016_N YhcG_C GIIM RVT-GII TraC-F-type Feature: gene Location: 2233-3273 bp Feature: domain Description: DUF1016_N Location: 2275-2677 bp Feature: domain Description: DUF1016 _N Location: 2275-26 77 bp Feature: domain Description: YhcG_C Location: 2761-3214 bp Feature: domain Description: YhcG_C Location: 276 1-3214 bp Feature: gene Location: 3258-3593 bp Feature: domain Description: GIIM Note: maturase Location: 3264-3402 bp Feature: domain Description: GIIM Note: maturase Location: 326 4-3402 bp Feature: gene Location: 3937-4101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964-4099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396 4-4099 bp Feature: gene Location: 4115-5068 bp Feature: domain Description: TraC-F-type Location: 4187-5021 bp Feature: domain Description: TraC-F-type Location: 4187-5021 bp Feature: gene Location: 4849-5658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, GIIM (pfam08388), RVT-GII, TraC-F-type (TIGR02746)

Seq: SPGN01000070.1 (26530 bp)
Overview 1 RT 1: 3095-6573 bp Neighborhood of RT #1 [3095, 6587] Transposase_20 DEDD_Tnp_IS110 RVT-GII Intron_maturas2 HNHc DEDD_Tnp_IS110 Feature: gene Location: 3095-3517 bp Feature: domain Description: Transposase_20 Location: 3200-3449 bp Feature: domain Description: Transposase_20 Location: 3200-3449 bp Feature: gene Location: 3448-3885 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3460-3703 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3460-37 03 bp Feature: gene Location: 4025-5812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4289-5114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4289-5114 bp Feature: domain Description: Intron_maturas2 Location: 5189-5495 bp Feature: domain Description: Intron_maturas2 Location: 5189-5495 bp Feature: domain Description: HNHc Note: nucleases Location: 5636-5786 bp Feature: domain Description: HNHc Note: nucleases Location: 5636-57 86 bp Feature: gene Location: 5900-6100 bp Feature: gene Location: 6312-6587 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 6372-6573 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 637 2-657 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: SPGN01000092.1 (17115 bp)
Overview 1 RT 1: 14305-16847 bp Neighborhood of RT #1 [14305, 16924] BI-1-like_bacterial RVT-GII GIIM Feature: gene Location: 14305-15015 bp Feature: domain Description: BI-1-like_bacterial Location: 14371-15004 bp Feature: domain Description: BI-1-like_bacterial Location: 14371-15004 bp Feature: gene Location: 15351-15695 bp Feature: gene Location: 15626-16924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15881-16571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158 8 1-16571 bp Feature: domain Description: GIIM Note: maturase Location: 16649-16847 bp Feature: domain Description: GIIM Note: maturase Location: 16649-168 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BI-1-like_bacterial (cd10432), RVT-GII, GIIM (pfam08388)

Seq: SPGN01000187.1 (1669 bp)
Overview 1 RT 1: 177-1586 bp Neighborhood of RT #1 [177, 1666] RVT-GII GIIM Feature: gene Location: 177-314 bp Feature: gene Location: 431-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689-1304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689 -1304 bp Feature: domain Description: GIIM Note: maturase Location: 1367-1586 bp Feature: domain Description: GIIM Note: maturase Location: 1367-1586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)