myRT

myRT report for GCA_005844775.1_ASM584477v1

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Seq: SPHU01000013.1 Bacteroides faecis strain 1001175st1_E5 NODE_13_length_118728_cov_26.6235, whole genome shotgun sequence (118728 bp)
Overview 1 RT 1: 2239-8720 bp 2 RT 2: 28099-33710 bp Neighborhood of RT #1 [2239, 8720] SMC_N SMC_N DUF262 RVT-UG28b VirE_N Neighborhood of RT #2 [28099, 33715] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 2239-3675 bp Feature: domain Description: SMC_N Location: 2245-2374 bp Feature: domain Description: SMC_N Location: 2245-2374 bp Feature: domain Description: SMC_N Location: 2887-3031 bp Feature: domain Description: SMC_N Location: 2887-3031 bp Feature: gene Location: 3683-5290 bp Feature: domain Description: DUF262 Location: 3719-4418 bp Feature: domain Description: DUF262 Location: 371 9-441 8 bp Feature: gene Location: 5414-7156 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 5831-6572 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 5831 -6572 bp Feature: gene Location: 7312-8322 bp Feature: domain Description: VirE_N Location: 7504-7876 bp Feature: domain Description: VirE_N Location: 7504-7876 bp Feature: gene Location: 8544-8720 bp Feature: gene Location: 28099-30621 bp Feature: domain Description: Bac_Flav_CT_G Location: 28102-30589 bp Feature: domain Description: Bac_Flav_CT_G Location: 281 02-30589 bp Feature: gene Location: 30680-30880 bp Feature: gene Location: 31002-32810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31266-32085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 266-32085 bp Feature: domain Description: Intron_maturas2 Location: 32160-32487 bp Feature: domain Description: Intron_maturas2 Location: 321 60-32487 bp Feature: domain Description: HNHc Note: nucleases Location: 32643-32787 bp Feature: domain Description: HNHc Note: nucleases Location: 32643-32787 bp Feature: gene Location: 32865-33206 bp Feature: gene Location: 33419-33715 bp Feature: domain Description: DUF4134 Location: 33440-33710 bp Feature: domain Description: DUF41 34 Location: 33440-3371 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_N (pfam02463), DUF262 (pfam03235), RVT-UG28b, VirE_N (pfam08800), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: SPHU01000147.1 Bacteroides faecis strain 1001175st1_E5 NODE_147_length_2507_cov_53.093, whole genome shotgun sequence (2507 bp)
Overview 1 RT 1: 584-2048 bp Neighborhood of RT #1 [584, 2392] RVT-GII Intron_maturas2 Feature: gene Location: 584-2392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1670 bp Feature: domain Description: Intron_maturas2 Location: 1793-2048 bp Feature: domain Description: Intron_maturas2 Location: 1793-2 048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: SPHU01000148.1 Bacteroides faecis strain 1001175st1_E5 NODE_148_length_2497_cov_69.5612, whole genome shotgun sequence (2497 bp)
Overview 1 RT 1: 203-2048 bp Neighborhood of RT #1 [203, 2380] matK RVT-GII Intron_maturas2 Feature: gene Location: 203-472 bp Feature: gene Location: 578-2380 bp Feature: domain Description: matK Location: 647-734 bp Feature: domain Description: matK Location: 647-73 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: domain Description: Intron_maturas2 Location: 1814-2048 bp Feature: domain Description: Intron_maturas2 Location: 1814-2048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: SPHU01000149.1 Bacteroides faecis strain 1001175st1_E5 NODE_149_length_2416_cov_63.9628, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: domain Description: RVT_N Location: 209-452 bp Feature: domain Description: RVT_N Location: 209-4 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 97-114 5 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-14 30 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SPHU01000025.1 Bacteroides faecis strain 1001175st1_E5 NODE_25_length_92353_cov_45.6756, whole genome shotgun sequence (92353 bp)
Overview 1 RT 1: 43422-52815 bp Neighborhood of RT #1 [43422, 52815] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 43422-43664 bp Feature: gene Location: 43844-44329 bp Feature: gene Location: 44326-45630 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44539-45133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 445 39-45 133 bp Feature: gene Location: 45732-52496 bp Feature: domain Description: Laminin_G_3 Location: 47175-47253 bp Feature: domain Description: Laminin_G_3 Location: 47175 -4725 3 bp Feature: domain Description: Laminin_G_3 Location: 47904-48330 bp Feature: domain Description: Laminin_G_3 Location: 47904-48330 bp Feature: gene Location: 52510-52815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: SPHU01000026.1 Bacteroides faecis strain 1001175st1_E5 NODE_26_length_89018_cov_22.5838, whole genome shotgun sequence (89018 bp)
Overview 1 RT 1: 50274-54006 bp Neighborhood of RT #1 [50274, 54006] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 50274-51086 bp Feature: domain Description: DUF1566 Location: 50808-51060 bp Feature: domain Description: DUF156 6 Location: 50808-5106 0 bp Feature: gene Location: 51232-51612 bp Feature: domain Description: Avd_like Location: 51259-51565 bp Feature: domain Description: Avd_like Location: 51259-5156 5 bp Feature: gene Location: 51627-53048 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51999-52704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51999-52704 bp Feature: gene Location: 53014-53289 bp Feature: gene Location: 53365-54006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: SPHU01000029.1 Bacteroides faecis strain 1001175st1_E5 NODE_29_length_81895_cov_28.3322, whole genome shotgun sequence (81895 bp)
Overview 1 RT 1: 1-4294 bp Neighborhood of RT #1 [1, 4974] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G SMC_prok_B Feature: gene Location: 1-1590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-865 bp Feature: domain Description: Intron_maturas2 Location: 940-1255 bp Feature: domain Description: Intron_maturas2 Location: 940-1255 bp Feature: domain Description: HNHc Note: nucleases Location: 1411-1561 bp Feature: domain Description: HNHc Note: nucleases Location: 1411-1561 bp Feature: gene Location: 1647-2213 bp Feature: domain Description: Bac_Flav_CT_G Location: 1680-2100 bp Feature: domain Description: Bac_Flav_CT_G Location: 1680-2100 bp Feature: gene Location: 2434-4974 bp Feature: domain Description: SMC_prok_B Location: 3982-4294 bp Feature: domain Description: SMC_prok_B Location: 3982-4294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), SMC_prok_B (TIGR02168)

Seq: SPHU01000051.1 Bacteroides faecis strain 1001175st1_E5 NODE_51_length_53948_cov_26.0526, whole genome shotgun sequence (53948 bp)
Overview 1 RT 1: 2847-15664 bp Neighborhood of RT #1 [2847, 15664] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2847-4643 bp Feature: domain Description: rpsA Location: 2916-4527 bp Feature: domain Description: rpsA Location: 2916-4527 bp Feature: gene Location: 4812-10685 bp Feature: domain Description: DUF4011 Location: 5976-6486 bp Feature: domain Description: DUF4011 Location: 5976-648 6 bp Feature: domain Description: DEXXQc_SF1 Location: 6825-7434 bp Feature: domain Description: DEXXQc_SF1 Location: 68 25-7434 bp Feature: domain Description: DEXXQc_SF1 Location: 8097-9012 bp Feature: domain Description: DEXXQc_SF1 Location: 8 097-9012 bp Feature: domain Description: KOG1803 Location: 9147-9525 bp Feature: domain Description: KOG18 03 Location: 9147-9525 bp Feature: domain Description: MTES_1575 Location: 9684-9972 bp Feature: domain Description: MTES_1575 Location: 968 4-9972 bp Feature: domain Description: DUF3320 Location: 10203-10323 bp Feature: domain Description: DUF3320 Location: 10203-10323 bp Feature: gene Location: 10727-11860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11051-11597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11051-11597 bp Feature: gene Location: 12065-14251 bp Feature: gene Location: 15155-15664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: SPHU01000006.1 Bacteroides faecis strain 1001175st1_E5 NODE_6_length_157113_cov_16.3954, whole genome shotgun sequence (157113 bp)
Overview 1 RT 1: 78853-89073 bp 2 RT 2: 128514-133200 bp Neighborhood of RT #1 [78853, 89084] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [128514, 133200] RVT-UG27 Feature: gene Location: 78853-80682 bp Feature: gene Location: 80745-81098 bp Feature: gene Location: 81089-82249 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81233-81974 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81233-819 74 bp Feature: gene Location: 82524-82925 bp Feature: domain Description: Avd_like Location: 82563-82902 bp Feature: domain Description: Avd_like Location: 82563-829 02 bp Feature: gene Location: 83055-89084 bp Feature: domain Description: DUF1566 Location: 88767-89073 bp Feature: domain Description: DUF1566 Location: 88767-89 073 bp Feature: gene Location: 128514-129116 bp Feature: gene Location: 129199-129429 bp Feature: gene Location: 129426-130694 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 129615-130251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 129 615-130251 bp Feature: gene Location: 131580-132176 bp Feature: gene Location: 132211-133200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), RVT-UG27

Seq: SPHU01000074.1 Bacteroides faecis strain 1001175st1_E5 NODE_74_length_26799_cov_25.7923, whole genome shotgun sequence (26799 bp)
Overview 1 RT 1: 1-2920 bp Neighborhood of RT #1 [1, 2920] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 1-1590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-865 bp Feature: domain Description: Intron_maturas2 Location: 937-1261 bp Feature: domain Description: Intron_maturas2 Location: 937-1261 bp Feature: domain Description: HNHc Note: nucleases Location: 1399-1561 bp Feature: domain Description: HNHc Note: nucleases Location: 1399-1561 bp Feature: gene Location: 1668-2195 bp Feature: domain Description: Bac_Flav_CT_G Location: 1686-2103 bp Feature: domain Description: Bac_Flav_CT_G Location: 1686-210 3 bp Feature: gene Location: 2183-2920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: SPHU01000089.1 Bacteroides faecis strain 1001175st1_E5 NODE_89_length_15848_cov_21.6522, whole genome shotgun sequence (15848 bp)
Overview 1 RT 1: 7831-12617 bp Neighborhood of RT #1 [7831, 12617] HTH_XRE S24_LexA-like INTN1_C_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7831-8595 bp Feature: domain Description: HTH_XRE Location: 7846-8020 bp Feature: domain Description: HTH_XRE Location: 7846-8020 bp Feature: domain Description: S24_LexA-like Location: 8287-8536 bp Feature: domain Description: S24_LexA-like Location: 8287-8536 bp Feature: gene Location: 8833-9183 bp Feature: domain Description: INTN1_C_like Location: 8938-9118 bp Feature: domain Description: INTN1_C_like Location: 8938-911 8 bp Feature: gene Location: 9188-11008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9452-10274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9452-10274 bp Feature: domain Description: Intron_maturas2 Location: 10349-10655 bp Feature: domain Description: Intron_maturas2 Location: 10349-10655 bp Feature: domain Description: HNHc Note: nucleases Location: 10832-10949 bp Feature: domain Description: HNHc Note: nucleases Location: 10832-10949 bp Feature: gene Location: 11742-12224 bp Feature: gene Location: 12312-12617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), S24_LexA-like (cd06529), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)