myRT

myRT report for GCA_005844885.1_ASM584488v1

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Seq: SPGZ01000055.1 (2491 bp)
Overview 1 RT 1: 115-2319 bp Neighborhood of RT #1 [115, 2319] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1 1 98 bp Feature: domain Description: Intron_maturas2 Location: 1273-1600 bp Feature: domain Description: Intron_maturas2 Location: 1 273-1 600 bp Feature: domain Description: HNHc Note: nucleases Location: 1753-1900 bp Feature: domain Description: HNHc Note: nucleases Location: 1 753-1 900 bp Feature: gene Location: 1978-2319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000020.1 (109849 bp)
Overview 1 RT 1: 34408-41050 bp Neighborhood of RT #1 [34408, 41106] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 34408-36099 bp Feature: domain Description: REC Location: 35191-35449 bp Feature: domain Description: REC Location: 35191-35449 bp Feature: gene Location: 36108-36752 bp Feature: gene Location: 36730-38949 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36931-37516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36931-37516 bp Feature: gene Location: 39228-40193 bp Feature: domain Description: Phage_int_SAM_5 Location: 39261-39516 bp Feature: domain Description: Phage_int_SAM_5 Location: 392 61-39516 bp Feature: domain Description: INTN1_C_like Location: 39621-40098 bp Feature: domain Description: INTN1_C_like Location: 3962 1-40098 bp Feature: gene Location: 40528-41106 bp Feature: domain Description: NGN_SP_UpxY Location: 40606-40888 bp Feature: domain Description: NGN_SP_UpxY Location: 40606-40888 bp Feature: domain Description: KOW_NusG Location: 40939-41050 bp Feature: domain Description: KOW_NusG Location: 40939-41050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000013.1 (155768 bp)
Overview 1 RT 1: 33026-36469 bp Neighborhood of RT #1 [33026, 36498] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 33026-33259 bp Feature: gene Location: 33458-33736 bp Feature: gene Location: 33699-35120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34074-34776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 4074-3 4776 bp Feature: gene Location: 35135-35542 bp Feature: domain Description: Avd_like Location: 35168-35477 bp Feature: domain Description: Avd_like Location: 3 5168-3 5477 bp Feature: gene Location: 35689-36498 bp Feature: domain Description: DUF1566 Location: 36220-36469 bp Feature: domain Description: DUF1566 Location: 3 6220-3 6469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000009.1 (257216 bp)
Overview 1 RT 1: 204423-205966 bp Neighborhood of RT #1 [204423, 205966] RVT-GII HTH_28 Feature: gene Location: 204423-204785 bp Feature: gene Location: 204789-204998 bp Feature: gene Location: 205028-205225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205031-205223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205031-205223 bp Feature: gene Location: 205346-205636 bp Feature: domain Description: HTH_28 Location: 205370-205514 bp Feature: domain Description: HTH_28 Location: 205370-205514 bp Feature: gene Location: 205814-205966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000016.1 (148932 bp)
Overview 1 RT 1: 12138-16776 bp Neighborhood of RT #1 [12138, 16776] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 12138-13310 bp Feature: domain Description: Arm-DNA-bind_5 Location: 12180-12363 bp Feature: domain Description: Arm-DNA-bind_5 Location: 12180-12363 bp Feature: domain Description: Phage_int_SAM_5 Location: 12423-12738 bp Feature: domain Description: Phage_int_SAM_5 Location: 12423-12738 bp Feature: domain Description: INTN1_C_like Location: 12801-13272 bp Feature: domain Description: INTN1_C_like Location: 12801-13272 bp Feature: gene Location: 13509-13748 bp Feature: gene Location: 13773-15584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14037-14859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14037-1485 9 bp Feature: domain Description: Intron_maturas2 Location: 15048-15258 bp Feature: domain Description: Intron_maturas2 Location: 15 048-15 25 8 bp Feature: domain Description: HNHc Note: nucleases Location: 15408-15513 bp Feature: domain Description: HNHc Note: nucleases Location: 15 408-15 5 13 bp Feature: gene Location: 16126-16416 bp Feature: domain Description: DUF4134 Location: 16198-16396 bp Feature: domain Description: DUF4134 Location: 16198-16396 bp Feature: gene Location: 16432-16776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000007.1 (342047 bp)
Overview 1 RT 1: 222471-234738 bp Neighborhood of RT #1 [222471, 234863] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 222471-224273 bp Feature: domain Description: rpsA Location: 222540-224157 bp Feature: domain Description: rpsA Location: 222540-224157 bp Feature: gene Location: 224370-230327 bp Feature: domain Description: DUF4011 Location: 225600-226113 bp Feature: domain Description: DUF4011 Location: 2256 00-226 113 bp Feature: domain Description: DEXXQc_SF1 Location: 226452-227073 bp Feature: domain Description: DEXXQc_SF1 Location: 226 452-227073 bp Feature: domain Description: DEXXQc_SF1 Location: 227880-228639 bp Feature: domain Description: DEXXQc_SF1 Location: 227880-2286 39 bp Feature: domain Description: TIGR00376 Location: 228768-229158 bp Feature: domain Description: TIGR00376 Location: 22876 8-229158 bp Feature: domain Description: MTES_1575 Location: 229311-229596 bp Feature: domain Description: MTES_1575 Location: 229311-229596 bp Feature: domain Description: DUF3320 Location: 229836-229977 bp Feature: domain Description: DUF3320 Location: 229836 -229977 bp Feature: gene Location: 230329-231459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 230650-231193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2306 50-231193 bp Feature: gene Location: 231665-233872 bp Feature: gene Location: 234039-234863 bp Feature: domain Description: PDDEXK_2 Location: 234060-234738 bp Feature: domain Description: PDDEXK_2 Location: 23406 0-234738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000004.1 (480865 bp)
Overview 1 RT 1: 154539-158994 bp Neighborhood of RT #1 [154539, 158994] TraX TraG_VirD4 VirD4 RVT_N RVT-GII GIIM Feature: gene Location: 154539-155237 bp Feature: domain Description: TraX Location: 154575-155214 bp Feature: domain Description: TraX Location: 15457 5-155214 bp Feature: gene Location: 155249-156952 bp Feature: domain Description: TraG_VirD4 Location: 155471-155834 bp Feature: domain Description: TraG_VirD4 Location: 15547 1-155834 bp Feature: domain Description: VirD4 Location: 156005-156530 bp Feature: domain Description: VirD4 Location: 156005-156530 bp Feature: gene Location: 156949-158604 bp Feature: domain Description: RVT_N Location: 157003-157246 bp Feature: domain Description: RVT_N Location: 157 003-157 246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157291-157936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157 291-157 936 bp Feature: domain Description: GIIM Note: maturase Location: 157987-158221 bp Feature: domain Description: GIIM Note: maturase Location: 157 987 -158221 bp Feature: gene Location: 158582-158827 bp Feature: gene Location: 158842-158994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGZ01000054.1 (2494 bp)
Overview 1 RT 1: 110-2440 bp Neighborhood of RT #1 [110, 2440] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: domain Description: Intron_maturas2 Location: 1271-1586 bp Feature: domain Description: Intron_maturas2 Location: 1271-158 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-18 92 bp Feature: gene Location: 2267-2440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT