myRT

myRT report for GCA_005844895.1_ASM584489v1

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Seq: SPGU01000019.1 (122428 bp)
Overview 1 RT 1: 87110-94697 bp Neighborhood of RT #1 [87110, 94714] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 87110-87424 bp Feature: domain Description: DUF3876 Location: 87164-87413 bp Feature: domain Description: DUF3876 Location: 871 64-8741 3 bp Feature: gene Location: 87439-89133 bp Feature: domain Description: Bac_Flav_CT_G Location: 87559-89125 bp Feature: domain Description: Bac_Flav_CT_G Location: 87559-891 25 bp Feature: gene Location: 89130-90791 bp Feature: domain Description: RVT_N Location: 89184-89427 bp Feature: domain Description: RVT_N Location: 891 84-89427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89472-90120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89472-901 20 bp Feature: domain Description: GIIM Note: maturase Location: 90174-90405 bp Feature: domain Description: GIIM Note: maturase Location: 901 74-90405 bp Feature: gene Location: 90876-91253 bp Feature: gene Location: 91375-92205 bp Feature: domain Description: Bac_Flav_CT_G Location: 91495-92191 bp Feature: domain Description: Bac_Flav_CT_G Location: 91 495-921 91 bp Feature: gene Location: 92186-93913 bp Feature: domain Description: RVT_N Location: 92291-92534 bp Feature: domain Description: RVT_N Location: 92291 -92534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92579-93227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92579-93227 bp Feature: domain Description: GIIM Note: maturase Location: 93278-93512 bp Feature: domain Description: GIIM Note: maturase Location: 93278-9351 2 bp Feature: gene Location: 94245-94400 bp Feature: gene Location: 94469-94714 bp Feature: domain Description: Bac_Flav_CT_G Location: 94472-94697 bp Feature: domain Description: Bac_Flav_CT_G Location: 94472-94697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGU01000032.1 (78195 bp)
Overview 1 RT 1: 849-13125 bp Neighborhood of RT #1 [849, 13241] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 849-1673 bp Feature: domain Description: PDDEXK_2 Location: 870-1548 bp Feature: domain Description: PDDEXK_2 Location: 870-1548 bp Feature: gene Location: 1840-4047 bp Feature: gene Location: 4253-5383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4574-5117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4574-5117 bp Feature: gene Location: 5385-11342 bp Feature: domain Description: DUF4011 Location: 6615-7128 bp Feature: domain Description: DUF4011 Location: 6615-712 8 bp Feature: domain Description: DEXXQc_SF1 Location: 7467-8433 bp Feature: domain Description: DEXXQc_SF1 Location: 7467-8433 bp Feature: domain Description: DEXXQc_SF1 Location: 8895-9654 bp Feature: domain Description: DEXXQc_SF1 Location: 8895-9654 bp Feature: domain Description: TIGR00376 Location: 9786-10173 bp Feature: domain Description: TIGR00376 Location: 9786-10173 bp Feature: domain Description: MTES_1575 Location: 10326-10611 bp Feature: domain Description: MTES_1575 Location: 1032 6-10611 bp Feature: domain Description: DUF3320 Location: 10851-10992 bp Feature: domain Description: DUF332 0 Location: 10851-10992 bp Feature: gene Location: 11439-13241 bp Feature: domain Description: rpsA Location: 11508-13125 bp Feature: domain Description: rpsA Location: 11508-1312 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGU01000005.1 (227756 bp)
Overview 1 RT 1: 221112-227055 bp Neighborhood of RT #1 [221112, 227657] KAP_NTPase RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 221112-223001 bp Feature: domain Description: KAP_NTPase Location: 221160-221796 bp Feature: domain Description: KAP_NTPase Location: 221160-221796 bp Feature: gene Location: 223243-224340 bp Feature: gene Location: 224319-225992 bp Feature: domain Description: RVT_N Location: 224373-224616 bp Feature: domain Description: RVT_N Location: 2243 73 -224616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224661-225309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224661-2253 09 bp Feature: domain Description: GIIM Note: maturase Location: 225363-225594 bp Feature: domain Description: GIIM Note: maturase Location: 2253 63 -225594 bp Feature: gene Location: 226007-226285 bp Feature: gene Location: 226650-227657 bp Feature: domain Description: COG4646 Location: 226659-227055 bp Feature: domain Description: COG4646 Location: 226659-227055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGU01000053.1 (42118 bp)
Overview 1 RT 1: 31305-36362 bp Neighborhood of RT #1 [31305, 36362] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 31305-32708 bp Feature: gene Location: 32923-33852 bp Feature: domain Description: Toprim_2 Location: 33475-33763 bp Feature: domain Description: Toprim_2 Location: 334 75-33763 bp Feature: gene Location: 33824-35632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34088-34910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 088-34 910 bp Feature: domain Description: Intron_maturas2 Location: 34979-35288 bp Feature: domain Description: Intron_maturas2 Location: 34 979-35288 bp Feature: gene Location: 35921-36064 bp Feature: gene Location: 36180-36362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGU01000022.1 (110431 bp)
Overview 1 RT 1: 34947-46330 bp Neighborhood of RT #1 [34947, 46330] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 34947-36092 bp Feature: domain Description: Arm-DNA-bind_5 Location: 34971-35217 bp Feature: domain Description: Arm-DNA-bind_5 Location: 34971-35 217 bp Feature: domain Description: Phage_int_SAM_5 Location: 35256-35541 bp Feature: domain Description: Phage_int_SAM_5 Location: 35 25 6-35 5 41 bp Feature: domain Description: INTN1_C_like Location: 35580-36054 bp Feature: domain Description: INTN1_C_like Location: 35 5 80-3605 4 bp Feature: gene Location: 36142-36636 bp Feature: gene Location: 36638-37993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36914-37505 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36914-375 05 bp Feature: gene Location: 38366-45154 bp Feature: domain Description: Laminin_G_3 Location: 40802-41183 bp Feature: domain Description: Laminin_G_3 Location: 40802-41183 bp Feature: domain Description: pfam08757 Location: 41978-42302 bp Feature: domain Description: pfam0875 7 Location: 41978-42302 bp Feature: domain Description: LRR_AMN1 Location: 42914-43358 bp Feature: domain Description: LRR_AMN1 Location: 42914-4335 8 bp Feature: gene Location: 45164-46330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGU01000003.1 (321443 bp)
Overview 1 RT 1: 76188-79719 bp 2 RT 2: 231854-235674 bp Neighborhood of RT #1 [76188, 79719] DUF1566 Avd_like RVT-DGRs Neighborhood of RT #2 [231854, 235674] RVT-DGRs RVT-DGRs Feature: gene Location: 76188-76997 bp Feature: domain Description: DUF1566 Location: 76719-76968 bp Feature: domain Description: DUF156 6 Location: 76 719-76 96 8 bp Feature: gene Location: 77144-77551 bp Feature: domain Description: Avd_like Location: 77177-77486 bp Feature: domain Description: Avd_like Location: 77177-77486 bp Feature: gene Location: 77566-78987 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77941-78643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77941-786 43 bp Feature: gene Location: 78950-79228 bp Feature: gene Location: 79426-79719 bp Feature: gene Location: 231854-233173 bp Feature: gene Location: 233227-233430 bp Feature: gene Location: 233714-234529 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 234047-234374 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 234047-234374 bp Feature: gene Location: 234411-234725 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 234426-234648 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 234426 -2346 48 bp Feature: gene Location: 234673-235257 bp Feature: gene Location: 235279-235674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGU01000001.1 (437482 bp)
Overview 1 RT 1: 182151-185800 bp Neighborhood of RT #1 [182151, 185800] RVT-DGRs Feature: gene Location: 182151-182531 bp Feature: gene Location: 182528-182956 bp Feature: gene Location: 182919-184106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 183252-183879 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 183252-18387 9 bp Feature: gene Location: 184228-184365 bp Feature: gene Location: 184439-185800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT