myRT

myRT report for GCA_005844905.1_ASM584490v1

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Seq: SPGR01000010.1 (256365 bp)
Overview 1 RT 1: 183-12459 bp 2 RT 2: 108673-113686 bp Neighborhood of RT #1 [183, 12575] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [108673, 113686] Mob_Pre Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 183-1007 bp Feature: domain Description: PDDEXK_2 Location: 204-882 bp Feature: domain Description: PDDEXK_2 Location: 204-882 bp Feature: gene Location: 1174-3381 bp Feature: gene Location: 3587-4717 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3908-4451 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3908-4451 bp Feature: gene Location: 4719-10676 bp Feature: domain Description: DUF4011 Location: 5949-6462 bp Feature: domain Description: DUF401 1 Location: 5949-6462 bp Feature: domain Description: DEXXQc_SF1 Location: 6801-7422 bp Feature: domain Description: DEXXQc_SF1 Location: 6801 -7422 bp Feature: domain Description: DEXXQc_SF1 Location: 8229-8988 bp Feature: domain Description: DEXXQc_SF1 Location: 8229-8988 bp Feature: domain Description: TIGR00376 Location: 9117-9507 bp Feature: domain Description: TIGR00376 Location: 91 1 7-9507 bp Feature: domain Description: MTES_1575 Location: 9660-9945 bp Feature: domain Description: MTES_1 575 Location: 9660-9945 bp Feature: domain Description: DUF3320 Location: 10185-10326 bp Feature: domain Description: DUF3320 Location: 1 01 85-1 0326 bp Feature: gene Location: 10773-12575 bp Feature: domain Description: rpsA Location: 10842-12459 bp Feature: domain Description: rpsA Location: 1 0842-1 2459 bp Feature: gene Location: 108673-110025 bp Feature: domain Description: Mob_Pre Location: 108679-109306 bp Feature: domain Description: Mob_Pre Location: 1 08679-1 09306 bp Feature: gene Location: 110238-111176 bp Feature: domain Description: Toprim_2 Location: 110790-111069 bp Feature: domain Description: Toprim_2 Location: 1 1 0790-1 1 1 069 bp Feature: gene Location: 111148-112956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111412-112234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 41 2-1 1 2234 bp Feature: domain Description: Intron_maturas2 Location: 112303-112612 bp Feature: domain Description: Intron_maturas2 Location: 1 1 2303-1 1 261 2 bp Feature: gene Location: 113245-113388 bp Feature: gene Location: 113504-113686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), Mob_Pre (pfam01076), Toprim_2 (pfam13155)
RVT-GII, Intron_maturas2 (pfam01348)

Seq: SPGR01000017.1 (167289 bp)
Overview 1 RT 1: 58446-63132 bp 2 RT 2: 103269-113634 bp Neighborhood of RT #1 [58446, 63132] RVT-UG27 HTH_Hin_like Neighborhood of RT #2 [103269, 113634] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 58446-59435 bp Feature: gene Location: 59470-60066 bp Feature: gene Location: 60952-62220 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61141-61777 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 61141-61777 bp Feature: gene Location: 62217-62540 bp Feature: domain Description: HTH_Hin_like Location: 62268-62370 bp Feature: domain Description: HTH_Hin_like Location: 62 2 68-62 370 bp Feature: gene Location: 62530-63132 bp Feature: gene Location: 103269-109298 bp Feature: domain Description: DUF1566 Location: 108984-109287 bp Feature: domain Description: DUF1566 Location: 108984-1092 87 bp Feature: gene Location: 109428-109829 bp Feature: domain Description: Avd_like Location: 109467-109806 bp Feature: domain Description: Avd_like Location: 109467-109806 bp Feature: gene Location: 109842-111263 bp Feature: domain Description: DUF1566 Location: 109914-110058 bp Feature: domain Description: DUF1566 Location: 109914-110058 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110247-110988 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1102 47-110988 bp Feature: gene Location: 111254-111607 bp Feature: gene Location: 111670-113634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, HTH_Hin_like (cd00569), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: SPGR01000023.1 (109759 bp)
Overview 1 RT 1: 68680-74728 bp Neighborhood of RT #1 [68680, 75378] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 68680-69258 bp Feature: domain Description: NGN_SP_UpxY Location: 68758-69040 bp Feature: domain Description: NGN_SP_UpxY Location: 68758-69040 bp Feature: domain Description: KOW_NusG Location: 69091-69202 bp Feature: domain Description: KOW_NusG Location: 69091-69202 bp Feature: gene Location: 69593-70558 bp Feature: domain Description: Phage_int_SAM_5 Location: 69626-69881 bp Feature: domain Description: Phage_int_SAM_5 Location: 69626-69881 bp Feature: domain Description: INTN1_C_like Location: 69986-70463 bp Feature: domain Description: INTN1_C_like Location: 69986-70463 bp Feature: gene Location: 70837-73056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71038-71623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7103 8-71623 bp Feature: gene Location: 73034-73678 bp Feature: gene Location: 73675-75378 bp Feature: domain Description: REC Location: 74470-74728 bp Feature: domain Description: REC Location: 74470-74728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: SPGR01000009.1 (261823 bp)
Overview 1 RT 1: 146901-155325 bp Neighborhood of RT #1 [146901, 155360] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 146901-147218 bp Feature: domain Description: DUF4134 Location: 146946-147213 bp Feature: domain Description: DUF4 134 Location: 14 694 6-14 7213 bp Feature: gene Location: 147441-147782 bp Feature: gene Location: 147837-149645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148101-148920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 8101-14 8920 bp Feature: domain Description: Intron_maturas2 Location: 148995-149322 bp Feature: domain Description: Intron_maturas2 Location: 14 8995-14 9322 bp Feature: domain Description: HNHc Note: nucleases Location: 149475-149622 bp Feature: domain Description: HNHc Note: nucleases Location: 14 94 75-14 9622 bp Feature: gene Location: 149635-150039 bp Feature: domain Description: DUF4133 Location: 149764-149995 bp Feature: domain Description: DUF4 133 Location: 14 9764 -14 9995 bp Feature: gene Location: 150036-152123 bp Feature: domain Description: Bac_Flav_CT_G Location: 150039-152067 bp Feature: domain Description: Bac_Flav_CT_G Location: 150039-152067 bp Feature: gene Location: 152694-154340 bp Feature: domain Description: RVT_N Location: 152748-152991 bp Feature: domain Description: RVT_N Location: 15274 8-152991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153036-153681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153036-153681 bp Feature: domain Description: GIIM Note: maturase Location: 153735-153966 bp Feature: domain Description: GIIM Note: maturase Location: 153735-153966 bp Feature: gene Location: 154349-154939 bp Feature: domain Description: Bac_Flav_CT_G Location: 154466-154922 bp Feature: domain Description: Bac_Flav_CT_G Location: 154 4 66-154 922 bp Feature: gene Location: 154980-155360 bp Feature: domain Description: DUF3876 Location: 155061-155325 bp Feature: domain Description: DUF3876 Location: 155061-155325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)

Seq: SPGR01000020.1 (143508 bp)
Overview 1 RT 1: 46004-57387 bp Neighborhood of RT #1 [46004, 57387] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 46004-47149 bp Feature: domain Description: Arm-DNA-bind_5 Location: 46028-46274 bp Feature: domain Description: Arm-DNA-bind_5 Location: 46028-46274 bp Feature: domain Description: Phage_int_SAM_5 Location: 46313-46598 bp Feature: domain Description: Phage_int_SAM_5 Location: 46313-465 98 bp Feature: domain Description: INTN1_C_like Location: 46637-47111 bp Feature: domain Description: INTN1_C_like Location: 46637-47111 bp Feature: gene Location: 47199-47693 bp Feature: gene Location: 47695-49050 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47971-48562 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47971-485 62 bp Feature: gene Location: 49423-56211 bp Feature: domain Description: Laminin_G_3 Location: 51859-52240 bp Feature: domain Description: Laminin_G_3 Location: 5 185 9-5 2240 bp Feature: domain Description: pfam08757 Location: 53035-53359 bp Feature: domain Description: pfam0875 7 Location: 5 3035 -5 335 9 bp Feature: domain Description: LRR_AMN1 Location: 53971-54415 bp Feature: domain Description: LRR_AMN1 Location: 5 3971-5 4415 bp Feature: gene Location: 56221-57387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: SPGR01000001.1 (732593 bp)
Overview 1 RT 1: 500037-501580 bp 2 RT 2: 570025-574734 bp 3 RT 3: 605154-608643 bp Neighborhood of RT #1 [500037, 501580] RVT-GII HTH_28 Neighborhood of RT #2 [570025, 574748] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #3 [605154, 608687] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 500037-500399 bp Feature: gene Location: 500403-500612 bp Feature: gene Location: 500642-500839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500645-500837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006 45-500837 bp Feature: gene Location: 500960-501250 bp Feature: domain Description: HTH_28 Location: 500984-501128 bp Feature: domain Description: HTH_28 Location: 500984-501128 bp Feature: gene Location: 501428-501580 bp Feature: gene Location: 570025-571854 bp Feature: domain Description: Bac_Flav_CT_G Location: 570028-571840 bp Feature: domain Description: Bac_Flav_CT_G Location: 570028-571840 bp Feature: gene Location: 571882-572055 bp Feature: gene Location: 572401-574212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572665-573487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5726 6 5-573487 bp Feature: domain Description: Intron_maturas2 Location: 573562-573877 bp Feature: domain Description: Intron_maturas2 Location: 57356 2-573877 bp Feature: domain Description: HNHc Note: nucleases Location: 574033-574183 bp Feature: domain Description: HNHc Note: nucleases Location: 574033-574183 bp Feature: gene Location: 574290-574568 bp Feature: domain Description: Bac_Flav_CT_G Location: 574308-574566 bp Feature: domain Description: Bac_Flav_CT_G Location: 574308-57456 6 bp Feature: gene Location: 574575-574748 bp Feature: domain Description: Bac_Flav_CT_G Location: 574578-574734 bp Feature: domain Description: Bac_Flav_CT_G Location: 574578-574734 bp Feature: gene Location: 605154-605447 bp Feature: gene Location: 605645-605923 bp Feature: gene Location: 605886-607307 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 606261-606963 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 06 26 1-6 06 96 3 bp Feature: gene Location: 607322-607729 bp Feature: domain Description: Avd_like Location: 607355-607664 bp Feature: domain Description: Avd_like Location: 6 07355-6 076 6 4 bp Feature: gene Location: 607893-608687 bp Feature: domain Description: DUF1566 Location: 608424-608643 bp Feature: domain Description: DUF156 6 Location: 6 08424-6 086 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)