myRT

myRT report for GCA_005844935.1_ASM584493v1

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Seq: SPGV01000031.1 (77552 bp)
Overview 1 RT 1: 205-12481 bp Neighborhood of RT #1 [205, 12597] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 205-1029 bp Feature: domain Description: PDDEXK_2 Location: 226-904 bp Feature: domain Description: PDDEXK_2 Location: 226-904 bp Feature: gene Location: 1196-3403 bp Feature: gene Location: 3609-4739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3930-4473 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3930-4473 bp Feature: gene Location: 4741-10698 bp Feature: domain Description: DUF4011 Location: 5971-6484 bp Feature: domain Description: DUF401 1 Location: 5971 -6484 bp Feature: domain Description: DEXXQc_SF1 Location: 6823-7789 bp Feature: domain Description: DEXXQc_SF1 Location: 6823-7789 bp Feature: domain Description: DEXXQc_SF1 Location: 8251-9010 bp Feature: domain Description: DEXXQc_SF1 Location: 8251 -901 0 bp Feature: domain Description: TIGR00376 Location: 9142-9529 bp Feature: domain Description: TIGR00376 Location: 91 42-9529 bp Feature: domain Description: MTES_1575 Location: 9682-9967 bp Feature: domain Description: MTES_1 575 Location: 9682-9967 bp Feature: domain Description: DUF3320 Location: 10207-10348 bp Feature: domain Description: DUF3320 Location: 1 0207-1 0348 bp Feature: gene Location: 10795-12597 bp Feature: domain Description: rpsA Location: 10864-12481 bp Feature: domain Description: rpsA Location: 1 0864-1 2481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGV01000070.1 (2496 bp)
Overview 1 RT 1: 57-2358 bp Neighborhood of RT #1 [57, 2387] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 57-230 bp Feature: gene Location: 576-2387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: domain Description: Intron_maturas2 Location: 1737-2052 bp Feature: domain Description: Intron_maturas2 Location: 1737-2 052 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-2358 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 08-2 358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGV01000006.1 (252816 bp)
Overview 1 RT 1: 120406-121949 bp Neighborhood of RT #1 [120406, 121949] HTH_28 RVT-GII Feature: gene Location: 120406-120558 bp Feature: gene Location: 120736-121026 bp Feature: domain Description: HTH_28 Location: 120760-120904 bp Feature: domain Description: HTH_28 Location: 120760-120904 bp Feature: gene Location: 121147-121344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121150-121342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121150-1213 42 bp Feature: gene Location: 121374-121583 bp Feature: gene Location: 121587-121949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGV01000001.1 (525740 bp)
Overview 1 RT 1: 440141-451515 bp Neighborhood of RT #1 [440141, 451515] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 440141-441286 bp Feature: domain Description: Arm-DNA-bind_5 Location: 440165-440411 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4 4 0165-4 4 04 11 bp Feature: domain Description: Phage_int_SAM_5 Location: 440450-440735 bp Feature: domain Description: Phage_int_SAM_5 Location: 4 4 04 50-4 4 0735 bp Feature: domain Description: INTN1_C_like Location: 440774-441248 bp Feature: domain Description: INTN1_C_like Location: 4 4 0774 -4 4 124 8 bp Feature: gene Location: 441335-441829 bp Feature: gene Location: 441831-443186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 442107-442698 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 4 2107-4 4 2698 bp Feature: gene Location: 443560-450348 bp Feature: domain Description: Laminin_G_3 Location: 445996-446377 bp Feature: domain Description: Laminin_G_3 Location: 4 4 5996-4 4 6377 bp Feature: domain Description: pfam08757 Location: 447172-447496 bp Feature: domain Description: pfam08757 Location: 4 4 7172-4 4 74 96 bp Feature: domain Description: LRR_AMN1 Location: 448102-448567 bp Feature: domain Description: LRR_AMN1 Location: 4 4 8102-4 4 8567 bp Feature: gene Location: 450358-451515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: SPGV01000008.1 (212712 bp)
Overview 1 RT 1: 6117-10760 bp Neighborhood of RT #1 [6117, 10762] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 6117-6248 bp Feature: gene Location: 6270-6863 bp Feature: domain Description: Bac_Flav_CT_G Location: 6387-6846 bp Feature: domain Description: Bac_Flav_CT_G Location: 6387-6846 bp Feature: gene Location: 6872-8518 bp Feature: domain Description: RVT_N Location: 6926-7169 bp Feature: domain Description: RVT_N Location: 6926-7169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7214-7859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7214-785 9 bp Feature: domain Description: GIIM Note: maturase Location: 7913-8144 bp Feature: domain Description: GIIM Note: maturase Location: 7913-8144 bp Feature: gene Location: 9149-10315 bp Feature: domain Description: Bac_Flav_CT_G Location: 9155-10313 bp Feature: domain Description: Bac_Flav_CT_G Location: 915 5 -10313 bp Feature: gene Location: 10361-10762 bp Feature: domain Description: Bac_Flav_CT_G Location: 10364-10760 bp Feature: domain Description: Bac_Flav_CT_G Location: 10364-10760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT