myRT

myRT report for GCA_005845215.1_ASM584521v1

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Seq: SPHO01000027.1 (73987 bp)
Overview 1 RT 1: 70545-73857 bp Neighborhood of RT #1 [70545, 73868] AAA_21 RVT-UG7 COG3943 Feature: gene Location: 70545-70988 bp Feature: domain Description: AAA_21 Location: 70602-70803 bp Feature: domain Description: AAA_21 Location: 70602-70803 bp Feature: gene Location: 71005-71160 bp Feature: gene Location: 71198-72826 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 71609-72014 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 71 609-7201 4 bp Feature: gene Location: 72864-73868 bp Feature: domain Description: COG3943 Location: 72900-73857 bp Feature: domain Description: COG3943 Location: 72900-73857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG7, COG3943 (Uncharacterized conserved protein )

Seq: SPHO01000023.1 (83693 bp)
Overview 1 RT 1: 58546-62256 bp 2 RT 2: 74175-78743 bp Neighborhood of RT #1 [58546, 62264] UgpE RVT-Retrons spoVFB PRK08306 Neighborhood of RT #2 [74175, 78745] RVT-GII HNHc YozG EcCorA_ZntB-like_u1 Feature: gene Location: 58546-59379 bp Feature: domain Description: UgpE Location: 58558-59374 bp Feature: domain Description: UgpE Location: 58558-59374 bp Feature: gene Location: 59526-59864 bp Feature: gene Location: 59695-60693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59860-60415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59860-60415 bp Feature: gene Location: 60817-61401 bp Feature: domain Description: spoVFB Location: 60820-61390 bp Feature: domain Description: spoVFB Location: 6082 0-61390 bp Feature: gene Location: 61419-62264 bp Feature: domain Description: PRK08306 Location: 61428-62256 bp Feature: domain Description: PRK08306 Location: 6142 8-62 2 56 bp Feature: gene Location: 74175-74510 bp Feature: gene Location: 74886-75077 bp Feature: gene Location: 75377-77251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75704-76442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75704-76442 bp Feature: domain Description: HNHc Note: nucleases Location: 76985-77138 bp Feature: domain Description: HNHc Note: nucleases Location: 76985-77138 bp Feature: gene Location: 77587-77844 bp Feature: domain Description: YozG Location: 77599-77797 bp Feature: domain Description: YozG Location: 77599-77797 bp Feature: gene Location: 77900-78745 bp Feature: domain Description: EcCorA_ZntB-like_u1 Location: 77948-78743 bp Feature: domain Description: EcCorA_ZntB-like_u1 Location: 77948-78743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), RVT-Retrons, spoVFB (PRK08305), PRK08306 (dipicolinate synthase subunit DpsA), RVT-GII, HNHc (smart00507), YozG (COG3655), EcCorA_ZntB-like_u1 (cd12826)

Seq: SPHO01000022.1 (87607 bp)
Overview 1 RT 1: 22898-26094 bp Neighborhood of RT #1 [22898, 26094] RVT-DGRs Feature: gene Location: 22898-23230 bp Feature: gene Location: 23246-23494 bp Feature: gene Location: 23993-25192 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24188-24905 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24188-24905 bp Feature: gene Location: 25185-25556 bp Feature: gene Location: 25498-26094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SPHO01000005.1 (334058 bp)
Overview 1 RT 1: 324767-329504 bp Neighborhood of RT #1 [324767, 329504] MdlB VanZ RVT-GII excise Feature: gene Location: 324767-326581 bp Feature: domain Description: MdlB Location: 324782-326558 bp Feature: domain Description: MdlB Location: 324 782-326558 bp Feature: gene Location: 326667-327179 bp Feature: domain Description: VanZ Location: 326721-327069 bp Feature: domain Description: VanZ Location: 326721-327069 bp Feature: gene Location: 328086-328508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328386-328434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328386-3284 34 bp Feature: gene Location: 328516-328821 bp Feature: domain Description: excise Location: 328660-328741 bp Feature: domain Description: excise Location: 328660-32874 1 bp Feature: gene Location: 328989-329504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), VanZ (pfam04892), RVT-GII, excise (TIGR01764)

Seq: SPHO01000007.1 (290817 bp)
Overview 1 RT 1: 244135-249967 bp Neighborhood of RT #1 [244135, 249975] RVT-GII FeoB Feature: gene Location: 244135-244269 bp Feature: gene Location: 244322-245098 bp Feature: gene Location: 245783-247603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246104-246806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246104-246806 bp Feature: gene Location: 247759-247893 bp Feature: gene Location: 247951-249975 bp Feature: domain Description: FeoB Location: 247993-249967 bp Feature: domain Description: FeoB Location: 247993-249967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, FeoB (COG0370)

Seq: SPHO01000013.1 (171268 bp)
Overview 1 RT 1: 7434-11110 bp Neighborhood of RT #1 [7434, 11250] RVT-GII GIIM PHA02517 HTH_Tnp_1 Feature: gene Location: 7434-7601 bp Feature: gene Location: 7767-7925 bp Feature: gene Location: 7957-9261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8158-8776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8158-8776 bp Feature: domain Description: GIIM Note: maturase Location: 8830-9040 bp Feature: domain Description: GIIM Note: maturase Location: 8830-9040 bp Feature: gene Location: 10095-10952 bp Feature: domain Description: PHA02517 Location: 10242-10914 bp Feature: domain Description: PHA02517 Location: 10242-10914 bp Feature: gene Location: 10903-11250 bp Feature: domain Description: HTH_Tnp_1 Location: 10912-11110 bp Feature: domain Description: HTH_Tnp_1 Location: 10912-11110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)

Seq: SPHO01000001.1 (754620 bp)
Overview 1 RT 1: 634283-640607 bp Neighborhood of RT #1 [634283, 640945] DUF3801 VirD4 RVT-GII KOG4768 VirD4 HTH_XRE Feature: gene Location: 634283-635401 bp Feature: domain Description: DUF3801 Location: 634385-635357 bp Feature: domain Description: DUF3801 Location: 634385-635357 bp Feature: gene Location: 635408-635974 bp Feature: domain Description: VirD4 Location: 635618-635939 bp Feature: domain Description: VirD4 Location: 635618-635939 bp Feature: gene Location: 636664-638487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636964-637666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636964-637 666 bp Feature: domain Description: KOG4768 Location: 637804-637900 bp Feature: domain Description: KOG47 68 Location: 637 804-637 900 bp Feature: gene Location: 638624-640282 bp Feature: domain Description: VirD4 Location: 638639-639755 bp Feature: domain Description: VirD4 Location: 638639-6397 55 bp Feature: gene Location: 640331-640945 bp Feature: domain Description: HTH_XRE Location: 640436-640607 bp Feature: domain Description: HTH_XRE Location: 640436-640607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HTH_XRE (smart00530)

Seq: SPHO01000011.1 (221074 bp)
Overview 1 RT 1: 60056-62733 bp Neighborhood of RT #1 [60056, 62738] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 60056-60352 bp Feature: domain Description: Phage_holin_5_2 Location: 60104-60335 bp Feature: domain Description: Phage_holin_5_2 Location: 60104-60335 bp Feature: gene Location: 60364-60702 bp Feature: gene Location: 60705-61901 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60900-61617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60900-61617 bp Feature: gene Location: 62113-62598 bp Feature: gene Location: 62595-62738 bp Feature: domain Description: Phage_XkdX Location: 62616-62733 bp Feature: domain Description: Phage_XkdX Location: 62616-62733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)