myRT

myRT report for GCA_005845245.1_ASM584524v1

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Seq: SPHK01000015.1 (134908 bp)
Overview 1 RT 1: 59027-67438 bp Neighborhood of RT #1 [59027, 69234] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 59027-60172 bp Feature: domain Description: Arm-DNA-bind_5 Location: 59051-59297 bp Feature: domain Description: Arm-DNA-bind_5 Location: 59051 -59297 bp Feature: domain Description: Phage_int_SAM_5 Location: 59336-59621 bp Feature: domain Description: Phage_int_SAM_5 Location: 59336-59621 bp Feature: domain Description: INTN1_C_like Location: 59660-60134 bp Feature: domain Description: INTN1 _C_like Location: 59660-601 34 bp Feature: gene Location: 60222-60716 bp Feature: gene Location: 60718-62073 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60994-61585 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60994-61 585 bp Feature: gene Location: 62218-62385 bp Feature: gene Location: 62446-69234 bp Feature: domain Description: Laminin_G_3 Location: 64882-65263 bp Feature: domain Description: Laminin_G_3 Location: 64882-65263 bp Feature: domain Description: pfam08757 Location: 66058-66382 bp Feature: domain Description: pfam08757 Location: 66058-66382 bp Feature: domain Description: LRR_AMN1 Location: 66994-67438 bp Feature: domain Description: LRR_AMN1 Location: 66994-67438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: SPHK01000007.1 (175734 bp)
Overview 1 RT 1: 93494-97290 bp Neighborhood of RT #1 [93494, 97290] RVT-DGRs RVT-DGRs Feature: gene Location: 93494-93889 bp Feature: gene Location: 93911-94495 bp Feature: gene Location: 94443-94757 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94452-94683 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94452 -94683 bp Feature: gene Location: 94639-95454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94972-95296 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94972 -952 96 bp Feature: gene Location: 95738-95941 bp Feature: gene Location: 95971-97290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: SPHK01000008.1 (173660 bp)
Overview 1 RT 1: 66557-73529 bp Neighborhood of RT #1 [66557, 75667] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Feature: gene Location: 66557-67804 bp Feature: domain Description: Relaxase Location: 66749-67109 bp Feature: domain Description: Relaxase Location: 66749-67109 bp Feature: gene Location: 67835-68527 bp Feature: domain Description: YWFCY Location: 67844-68021 bp Feature: domain Description: YWFCY Location: 67844-68021 bp Feature: gene Location: 69163-70824 bp Feature: domain Description: RVT_N Location: 69214-69457 bp Feature: domain Description: RVT_N Location: 69214-69457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69502-70150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69502-70150 bp Feature: domain Description: GIIM Note: maturase Location: 70201-70435 bp Feature: domain Description: GIIM Note: maturase Location: 70201-7043 5 bp Feature: gene Location: 70824-72281 bp Feature: domain Description: TraG-D_C Location: 71649-71979 bp Feature: domain Description: TraG-D_C Location: 71649-71979 bp Feature: gene Location: 72413-75667 bp Feature: domain Description: KAP_NTPase Location: 72551-73529 bp Feature: domain Description: KAP_NTPase Location: 72551-73 529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), KAP_NTPase (pfam07693)

Seq: SPHK01000035.1 (22172 bp)
Overview 1 RT 1: 10638-14139 bp Neighborhood of RT #1 [10638, 14804] RVT-DGRs Phage_Mu_F Feature: gene Location: 10638-10880 bp Feature: gene Location: 11070-11555 bp Feature: gene Location: 11555-12856 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11768-12365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11768-12365 bp Feature: gene Location: 13235-13468 bp Feature: gene Location: 13578-14804 bp Feature: domain Description: Phage_Mu_F Location: 13863-14139 bp Feature: domain Description: Phage_Mu_F Location: 13863-14 139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: SPHK01000004.1 (239324 bp)
Overview 1 RT 1: 174223-180423 bp Neighborhood of RT #1 [174223, 180440] DNA_pol_A DNA_pol_A RVT-UG9 ComA-like_MBL-fold ComA-like_MBL-fold COG3943 Feature: gene Location: 174223-174390 bp Feature: gene Location: 174420-175838 bp Feature: domain Description: DNA_pol_A Location: 175014-175452 bp Feature: domain Description: DNA_pol_A Location: 175 014-175 45 2 bp Feature: domain Description: DNA_pol_A Location: 175587-175737 bp Feature: domain Description: DNA_pol_A Location: 175 5 87-175 737 bp Feature: gene Location: 175856-178237 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 176774-177389 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 176774-177389 bp Feature: gene Location: 178212-179204 bp Feature: domain Description: ComA-like_MBL-fold Location: 178263-178527 bp Feature: domain Description: ComA-like_MBL-fold Location: 178263-1785 27 bp Feature: domain Description: ComA-like_MBL-fold Location: 178776-178944 bp Feature: domain Description: ComA-like_MBL-fold Location: 178776-178944 bp Feature: gene Location: 179442-180440 bp Feature: domain Description: COG3943 Location: 179460-180423 bp Feature: domain Description: COG3943 Location: 179460-180423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_pol_A (pfam00476), RVT-UG9, ComA-like_MBL-fold (cd07731), COG3943 (Uncharacterized conserved protein )

Seq: SPHK01000011.1 (160710 bp)
Overview 1 RT 1: 52316-56252 bp Neighborhood of RT #1 [52316, 56252] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 52316-52774 bp Feature: gene Location: 52804-53742 bp Feature: domain Description: Toprim_2 Location: 53356-53635 bp Feature: domain Description: Toprim_2 Location: 53356 -536 35 bp Feature: gene Location: 53714-55522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53978-54800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53978-54800 bp Feature: domain Description: Intron_maturas2 Location: 54869-55178 bp Feature: domain Description: Intron_maturas2 Location: 5486 9-55178 bp Feature: gene Location: 55811-55954 bp Feature: gene Location: 56070-56252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: SPHK01000025.1 (60057 bp)
Overview 1 RT 1: 45103-58611 bp Neighborhood of RT #1 [45103, 58611] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 45103-45345 bp Feature: gene Location: 45525-46010 bp Feature: gene Location: 46007-47311 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46220-46814 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46220-46814 bp Feature: gene Location: 47828-54565 bp Feature: domain Description: Laminin_G_3 Location: 49289-49367 bp Feature: domain Description: Laminin_G_3 Location: 49289-49367 bp Feature: domain Description: Laminin_G_3 Location: 50018-50444 bp Feature: domain Description: Laminin_G_3 Location: 50018-50444 bp Feature: gene Location: 54592-58611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)