myRT

myRT report for GCA_005845405.1_ASM584540v1

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Seq: VCDZ01000009.1 (255646 bp)
Overview 1 RT 1: 108869-111983 bp Neighborhood of RT #1 [108869, 111988] pyrE pyrE RVT-Retrons slmA dut Feature: gene Location: 108869-109030 bp Feature: domain Description: pyrE Location: 108887-108983 bp Feature: domain Description: pyrE Location: 1 08887-1 08983 bp Feature: gene Location: 109054-109524 bp Feature: domain Description: pyrE Location: 109060-109519 bp Feature: domain Description: pyrE Location: 1 09060-1 0951 9 bp Feature: gene Location: 109822-110781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109960-110506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 09960-1 1 0506 bp Feature: gene Location: 110827-111423 bp Feature: domain Description: slmA Location: 110833-111409 bp Feature: domain Description: slmA Location: 1 1 0833-1 1 1 409 bp Feature: gene Location: 111530-111988 bp Feature: domain Description: dut Location: 111536-111983 bp Feature: domain Description: dut Location: 1 1 1 536-1 1 1 983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: VCDZ01000028.1 (71311 bp)
Overview 1 RT 1: 5300-12587 bp Neighborhood of RT #1 [5300, 12587] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PinE RVT-UG4 Feature: gene Location: 5300-5647 bp Feature: domain Description: TnpB_IS66 Location: 5327-5618 bp Feature: domain Description: TnpB_IS66 Location: 532 7-5618 bp Feature: gene Location: 5667-7106 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5805-6027 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5805-602 7 bp Feature: domain Description: zf-IS66 Location: 6051-6183 bp Feature: domain Description: zf-IS66 Location: 6051-6183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6228-7065 bp Feature: domain Description: DDE_Tnp_IS66 Location: 62 2 8-7065 bp Feature: gene Location: 7568-8800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7769-8423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7769-842 3 bp Feature: domain Description: GIIM Note: maturase Location: 8501-8723 bp Feature: domain Description: GIIM Note: maturase Location: 8501-872 3 bp Feature: gene Location: 8916-9062 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8928-9039 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 892 8-9039 bp Feature: gene Location: 9162-9584 bp Feature: domain Description: PinE Location: 9192-9567 bp Feature: domain Description: PinE Location: 9192 -9567 bp Feature: gene Location: 10111-10929 bp Feature: gene Location: 10926-11936 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 11277-11721 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 112 77-1172 1 bp Feature: gene Location: 12000-12179 bp Feature: gene Location: 12375-12587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PinE (COG1961), RVT-UG4

Seq: VCDZ01000046.1 (21150 bp)
Overview 1 RT 1: 11422-14265 bp Neighborhood of RT #1 [11422, 14324] RVT-UG4 StbD Feature: gene Location: 11422-12084 bp Feature: gene Location: 12204-12347 bp Feature: gene Location: 12344-13354 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12695-13139 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12695-13 13 9 bp Feature: gene Location: 13699-13866 bp Feature: gene Location: 14073-14324 bp Feature: domain Description: StbD Location: 14085-14265 bp Feature: domain Description: StbD Location: 14085-14265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, StbD (COG2161)

Seq: VCDZ01000003.1 (724477 bp)
Overview 1 RT 1: 611763-617988 bp Neighborhood of RT #1 [611763, 618134] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 611763-612017 bp Feature: domain Description: Phage_integrase Location: 611829-611925 bp Feature: domain Description: Phage_integrase Location: 611829-611925 bp Feature: gene Location: 612100-612570 bp Feature: gene Location: 612911-616120 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 613439-613925 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6134 39-613925 bp Feature: domain Description: nitrilase Location: 615434-616031 bp Feature: domain Description: nitrilase Location: 6154 34 -616031 bp Feature: gene Location: 616415-617218 bp Feature: domain Description: AbiEi_3_N Location: 616448-616709 bp Feature: domain Description: AbiEi_3_N Location: 6164 4 8-616709 bp Feature: domain Description: AbiEi_3 Location: 616721-617177 bp Feature: domain Description: AbiEi_3 Location: 616721-617177 bp Feature: gene Location: 617205-618134 bp Feature: domain Description: AbiEii Location: 617247-617988 bp Feature: domain Description: AbiEii Location: 61724 7-617988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)