myRT

myRT report for GCA_005863485.1_ASM586348v1

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Seq: VAUY01000023.1 (132547 bp)
Overview 1 RT 1: 40937-46518 bp Neighborhood of RT #1 [40937, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40937-41131 bp Feature: gene Location: 41270-41524 bp Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 41 276-41 51 6 bp Feature: gene Location: 41600-42919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 603-421 79 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 4271 6-42854 bp Feature: gene Location: 44642-45586 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651 -45551 bp Feature: gene Location: 45687-46523 bp Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-4651 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAUY01000041.1 (141234 bp)
Overview 1 RT 1: 56110-66843 bp 2 RT 2: 83101-91921 bp Neighborhood of RT #1 [56110, 66845] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83101, 91950] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56110-56325 bp Feature: domain Description: NERD Location: 56137-56260 bp Feature: domain Description: NERD Location: 56137-562 60 bp Feature: gene Location: 56538-57659 bp Feature: domain Description: COG3177 Location: 56556-57648 bp Feature: domain Description: COG3177 Location: 56556-57648 bp Feature: gene Location: 58382-60067 bp Feature: domain Description: RVT_N Location: 58439-58679 bp Feature: domain Description: RVT_N Location: 58439-58679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58727-59363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872 7-59363 bp Feature: domain Description: GIIM Note: maturase Location: 59417-59648 bp Feature: domain Description: GIIM Note: maturase Location: 59417-59648 bp Feature: domain Description: HNH Note: nucleases Location: 59900-60038 bp Feature: domain Description: HNH Note: nucleases Location: 59900-60038 bp Feature: gene Location: 61148-64885 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61256-61913 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 612 56-61913 bp Feature: domain Description: PRK09776 Location: 62126-62597 bp Feature: domain Description: PRK09776 Location: 62 12 6-62 597 bp Feature: domain Description: PAS Location: 62654-63179 bp Feature: domain Description: PAS Location: 62 654-63179 bp Feature: domain Description: PRK10060 Location: 63191-64835 bp Feature: domain Description: PRK10060 Location: 63191-64835 bp Feature: gene Location: 64992-66845 bp Feature: domain Description: PRK05658 Location: 65004-66843 bp Feature: domain Description: PRK05658 Location: 65004-66843 bp Feature: gene Location: 83101-84315 bp Feature: domain Description: PRK10770 Location: 83113-84307 bp Feature: domain Description: PRK10770 Location: 83113-84307 bp Feature: gene Location: 84374-87145 bp Feature: domain Description: LptD Location: 84569-87131 bp Feature: domain Description: LptD Location: 84569-87131 bp Feature: gene Location: 87278-88990 bp Feature: domain Description: RVT_N Location: 87335-87578 bp Feature: domain Description: RVT_N Location: 87335-87578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87623-88259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762 3-882 59 bp Feature: domain Description: YkfC Location: 88469-88619 bp Feature: domain Description: YkfC Location: 88469-88619 bp Feature: domain Description: HNH Note: nucleases Location: 88796-88934 bp Feature: domain Description: HNH Note: nucleases Location: 88796-88934 bp Feature: gene Location: 90263-91279 bp Feature: domain Description: COG3178 Location: 90266-91265 bp Feature: domain Description: COG3178 Location: 902 66-912 65 bp Feature: gene Location: 91276-91950 bp Feature: domain Description: NTP_transferase_like_1 Location: 91282-91921 bp Feature: domain Description: NTP_transferase_like_1 Location: 912 82 -9192 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAUY01000080.1 (38263 bp)
Overview 1 RT 1: 20-3229 bp Neighborhood of RT #1 [20, 3229] DUF772 RVT-GII GIIM Feature: gene Location: 20-661 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-3 65 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263 -1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 2468-2866 bp Feature: gene Location: 3050-3229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAUY01000117.1 (35908 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 33074 -3314 3 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 33617-3394 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)