myRT

myRT report for GCA_005863495.1_ASM586349v1

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Seq: VAUZ01000074.1 (43736 bp)
Overview 1 RT 1: 34956-39252 bp Neighborhood of RT #1 [34956, 39335] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34956-35135 bp Feature: gene Location: 35319-35717 bp Feature: gene Location: 35867-37135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: domain Description: GIIM Note: maturase Location: 3681 5-37037 bp Feature: gene Location: 37524-38165 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: gene Location: 38508-39335 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAUZ01000021.1 (35910 bp)
Overview 1 RT 1: 1769-9080 bp Neighborhood of RT #1 [1769, 10135] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1769-2908 bp Feature: domain Description: AAA_21 Location: 1841-1910 bp Feature: domain Description: AAA_2 1 Location: 1841-1910 bp Feature: domain Description: AAA_21 Location: 2384-2714 bp Feature: domain Description: AAA_2 1 Location: 2 384-2 714 bp Feature: gene Location: 2908-3465 bp Feature: gene Location: 3462-6482 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3957-4428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3957-442 8 bp Feature: gene Location: 6479-8260 bp Feature: domain Description: YeeA Location: 7346-8126 bp Feature: domain Description: YeeA Location: 7346-812 6 bp Feature: gene Location: 8264-10135 bp Feature: domain Description: DUF262 Location: 8312-9080 bp Feature: domain Description: DUF2 62 Location: 8312 -9080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAUZ01000024.1 (141236 bp)
Overview 1 RT 1: 49286-58127 bp 2 RT 2: 74391-88312 bp Neighborhood of RT #1 [49286, 58135] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74391, 88467] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49286-49960 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-49931 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-4993 1 bp Feature: gene Location: 49957-50973 bp Feature: domain Description: COG3178 Location: 49960-50959 bp Feature: domain Description: COG3 178 Location: 49960-50959 bp Feature: gene Location: 52246-53958 bp Feature: domain Description: RVT_N Location: 52303-52546 bp Feature: domain Description: RVT_N Location: 523 03 -52546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591-53227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591-53 227 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: YkfC Location: 53 43 7-53 587 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: domain Description: HNH Note: nucleases Location: 53 764-53 902 bp Feature: gene Location: 54091-56862 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: gene Location: 56921-58135 bp Feature: domain Description: PRK10770 Location: 56933-58127 bp Feature: domain Description: PRK10770 Location: 5693 3 -58127 bp Feature: gene Location: 74391-76244 bp Feature: domain Description: PRK05658 Location: 74403-76242 bp Feature: domain Description: PRK05658 Location: 74403 -76242 bp Feature: gene Location: 76351-80088 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-77116 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-77116 bp Feature: domain Description: PRK09776 Location: 77329-77800 bp Feature: domain Description: PRK09776 Location: 773 29-77800 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PAS Location: 77857-783 82 bp Feature: domain Description: PRK10060 Location: 78394-80038 bp Feature: domain Description: PRK10060 Location: 783 94-8003 8 bp Feature: gene Location: 81169-82854 bp Feature: domain Description: RVT_N Location: 81226-81466 bp Feature: domain Description: RVT_N Location: 81226-81466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81514-82150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81514-82150 bp Feature: domain Description: GIIM Note: maturase Location: 82204-82435 bp Feature: domain Description: GIIM Note: maturase Location: 82204-8243 5 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: gene Location: 83577-84698 bp Feature: domain Description: COG3177 Location: 83595-84687 bp Feature: domain Description: COG3 177 Location: 83 595-84687 bp Feature: gene Location: 85741-88467 bp Feature: domain Description: IMPa_N_2 Location: 85948-86530 bp Feature: domain Description: IMPa_N_2 Location: 85948-8653 0 bp Feature: domain Description: IMPa_helical Location: 86611-86938 bp Feature: domain Description: IMPa_helical Location: 86611-8693 8 bp Feature: domain Description: Peptidase_M60 Location: 87382-88312 bp Feature: domain Description: Peptidase_M60 Location: 873 82-883 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: VAUZ01000044.1 (161990 bp)
Overview 1 RT 1: 70379-75960 bp Neighborhood of RT #1 [70379, 75965] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 70379-70573 bp Feature: gene Location: 70712-70966 bp Feature: domain Description: SdhE Location: 70718-70958 bp Feature: domain Description: SdhE Location: 70718-70958 bp Feature: gene Location: 71042-72361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71045-71621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7104 5-71621 bp Feature: domain Description: YkfC Location: 71819-71975 bp Feature: domain Description: YkfC Location: 71819-71975 bp Feature: domain Description: HNH Note: nucleases Location: 72158-72296 bp Feature: domain Description: HNH Note: nucleases Location: 72158-72296 bp Feature: gene Location: 74084-75028 bp Feature: domain Description: YgfZ Location: 74093-74993 bp Feature: domain Description: YgfZ Location: 74 093-74 993 bp Feature: gene Location: 75129-75965 bp Feature: domain Description: HDOD Location: 75132-75960 bp Feature: domain Description: HDOD Location: 75132-75960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)