myRT

myRT report for GCA_005863555.1_ASM586355v1

Download annotations/find similar RTs

Seq: VAVA01000037.1 (141234 bp)
Overview 1 RT 1: 49285-58126 bp 2 RT 2: 74390-88311 bp Neighborhood of RT #1 [49285, 58134] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74390, 88466] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49285-49959 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-49930 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291 -49930 bp Feature: gene Location: 49956-50972 bp Feature: domain Description: COG3178 Location: 49959-50958 bp Feature: domain Description: COG31 78 Location: 49959-50958 bp Feature: gene Location: 52245-53957 bp Feature: domain Description: RVT_N Location: 52302-52545 bp Feature: domain Description: RVT_N Location: 52302-52545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: gene Location: 54090-56861 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: gene Location: 56920-58134 bp Feature: domain Description: PRK10770 Location: 56932-58126 bp Feature: domain Description: PRK1 0770 Location: 56932-581 26 bp Feature: gene Location: 74390-76243 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: gene Location: 76350-80087 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-771 1 5 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: domain Description: PRK1 0060 Location: 78393-80037 bp Feature: gene Location: 81168-82853 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: domain Description: RVT_N Location: 81 225-81 465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-82149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 51 3-821 49 bp Feature: domain Description: GIIM Note: maturase Location: 82203-82434 bp Feature: domain Description: GIIM Note: maturase Location: 82203-82434 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: gene Location: 83576-84697 bp Feature: domain Description: COG3177 Location: 83594-84686 bp Feature: domain Description: COG31 77 Location: 83594-84686 bp Feature: gene Location: 85740-88466 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_helical Location: 86610-86937 bp Feature: domain Description: IMPa_helical Location: 8661 0-86937 bp Feature: domain Description: Peptidase_M60 Location: 87381-88311 bp Feature: domain Description: Peptidase_M60 Location: 87381 -8831 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: VAVA01000085.1 (43777 bp)
Overview 1 RT 1: 34957-39253 bp Neighborhood of RT #1 [34957, 39336] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34957-35136 bp Feature: gene Location: 35320-35718 bp Feature: gene Location: 35868-37136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36081-36738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36081-36738 bp Feature: domain Description: GIIM Note: maturase Location: 36816-37038 bp Feature: domain Description: GIIM Note: maturase Location: 36816-37038 bp Feature: gene Location: 37525-38166 bp Feature: domain Description: DUF772 Location: 37675-37870 bp Feature: domain Description: DUF772 Location: 37675-37870 bp Feature: gene Location: 38509-39336 bp Feature: domain Description: ABC_phnC Location: 38539-39253 bp Feature: domain Description: ABC_phnC Location: 38539-392 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVA01000006.1 (132370 bp)
Overview 1 RT 1: 40760-46341 bp Neighborhood of RT #1 [40760, 46346] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40760-40954 bp Feature: gene Location: 41093-41347 bp Feature: domain Description: SdhE Location: 41099-41339 bp Feature: domain Description: SdhE Location: 41099-413 3 9 bp Feature: gene Location: 41423-42742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41426-42002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41426-42002 bp Feature: domain Description: YkfC Location: 42200-42356 bp Feature: domain Description: YkfC Location: 42200-423 56 bp Feature: domain Description: HNH Note: nucleases Location: 42539-42677 bp Feature: domain Description: HNH Note: nucleases Location: 4253 9-42677 bp Feature: gene Location: 44465-45409 bp Feature: domain Description: YgfZ Location: 44474-45374 bp Feature: domain Description: YgfZ Location: 44474-453 74 bp Feature: gene Location: 45510-46346 bp Feature: domain Description: HDOD Location: 45513-46341 bp Feature: domain Description: HDOD Location: 45513 -463 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVA01000089.1 (35908 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 33074 -3314 3 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 33617-3394 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)