myRT

myRT report for GCA_005863585.1_ASM586358v1

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Seq: VAVC01000025.1 (141234 bp)
Overview 1 RT 1: 56109-66842 bp 2 RT 2: 83100-91920 bp Neighborhood of RT #1 [56109, 66844] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83100, 91949] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56109-56324 bp Feature: domain Description: NERD Location: 56136-56259 bp Feature: domain Description: NERD Location: 561 36-56259 bp Feature: gene Location: 56537-57658 bp Feature: domain Description: COG3177 Location: 56555-57647 bp Feature: domain Description: COG31 77 Location: 56555-57647 bp Feature: gene Location: 58381-60066 bp Feature: domain Description: RVT_N Location: 58438-58678 bp Feature: domain Description: RVT_N Location: 58438-58678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58726-59362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58726-59362 bp Feature: domain Description: GIIM Note: maturase Location: 59416-59647 bp Feature: domain Description: GIIM Note: maturase Location: 5941 6-59647 bp Feature: domain Description: HNH Note: nucleases Location: 59899-60037 bp Feature: domain Description: HNH Note: nucleases Location: 59899-60037 bp Feature: gene Location: 61147-64884 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61255-61912 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 255-61 91 2 bp Feature: domain Description: PRK09776 Location: 62125-62596 bp Feature: domain Description: PRK09776 Location: 621 25-62596 bp Feature: domain Description: PAS Location: 62653-63178 bp Feature: domain Description: PAS Location: 62653-631 78 bp Feature: domain Description: PRK10060 Location: 63190-64834 bp Feature: domain Description: PRK1 0060 Location: 631 90-64834 bp Feature: gene Location: 64991-66844 bp Feature: domain Description: PRK05658 Location: 65003-66842 bp Feature: domain Description: PRK05658 Location: 65003-66842 bp Feature: gene Location: 83100-84314 bp Feature: domain Description: PRK10770 Location: 83112-84306 bp Feature: domain Description: PRK1 0770 Location: 831 1 2-84306 bp Feature: gene Location: 84373-87144 bp Feature: domain Description: LptD Location: 84568-87130 bp Feature: domain Description: LptD Location: 84568-871 30 bp Feature: gene Location: 87277-88989 bp Feature: domain Description: RVT_N Location: 87334-87577 bp Feature: domain Description: RVT_N Location: 87334-87577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87622-88258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87622-88258 bp Feature: domain Description: YkfC Location: 88468-88618 bp Feature: domain Description: YkfC Location: 88468-8861 8 bp Feature: domain Description: HNH Note: nucleases Location: 88795-88933 bp Feature: domain Description: HNH Note: nucleases Location: 88795-88933 bp Feature: gene Location: 90262-91278 bp Feature: domain Description: COG3178 Location: 90265-91264 bp Feature: domain Description: COG31 78 Location: 90265-91 264 bp Feature: gene Location: 91275-91949 bp Feature: domain Description: NTP_transferase_like_1 Location: 91281-91920 bp Feature: domain Description: NTP_transferase_like_1 Location: 91 281 -91 920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAVC01000037.1 (43737 bp)
Overview 1 RT 1: 4403-8782 bp Neighborhood of RT #1 [4403, 8782] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4403-5230 bp Feature: domain Description: ABC_phnC Location: 4433-5147 bp Feature: domain Description: ABC_phnC Location: 4433-5147 bp Feature: gene Location: 5573-6214 bp Feature: domain Description: DUF772 Location: 5723-5918 bp Feature: domain Description: DUF772 Location: 572 3-5918 bp Feature: gene Location: 6603-7871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6816-7473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6816-7473 bp Feature: domain Description: GIIM Note: maturase Location: 7551-7773 bp Feature: domain Description: GIIM Note: maturase Location: 7551-7773 bp Feature: gene Location: 8021-8419 bp Feature: gene Location: 8603-8782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVC01000003.1 (132548 bp)
Overview 1 RT 1: 86026-91612 bp Neighborhood of RT #1 [86026, 91612] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 86026-86862 bp Feature: domain Description: HDOD Location: 86029-86857 bp Feature: domain Description: HDOD Location: 86029-86857 bp Feature: gene Location: 86963-87907 bp Feature: domain Description: YgfZ Location: 86972-87872 bp Feature: domain Description: YgfZ Location: 86972-87872 bp Feature: gene Location: 89630-90949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89633-90209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8963 3 -90209 bp Feature: domain Description: YkfC Location: 90407-90563 bp Feature: domain Description: YkfC Location: 90407-90563 bp Feature: domain Description: HNH Note: nucleases Location: 90746-90884 bp Feature: domain Description: HNH Note: nucleases Location: 90746-90884 bp Feature: gene Location: 91025-91279 bp Feature: domain Description: SdhE Location: 91031-91271 bp Feature: domain Description: SdhE Location: 9103 1-91271 bp Feature: gene Location: 91418-91612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: VAVC01000051.1 (35910 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824 -26592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924 -30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33075-3314 4 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_21 Location: 33618-3394 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)