myRT

myRT report for GCA_005863595.1_ASM586359v1

Download annotations/find similar RTs

Seq: VAVD01000051.1 (36022 bp)
Overview 1 RT 1: 1825-9136 bp Neighborhood of RT #1 [1825, 10191] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1825-2964 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 1 897-1 966 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: gene Location: 2964-3521 bp Feature: gene Location: 3518-6538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 401 3-4484 bp Feature: gene Location: 6535-8316 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: domain Description: YeeA Location: 7402-81 82 bp Feature: gene Location: 8320-10191 bp Feature: domain Description: DUF262 Location: 8368-9136 bp Feature: domain Description: DUF262 Location: 8368-91 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVD01000020.1 (132604 bp)
Overview 1 RT 1: 40937-46518 bp Neighborhood of RT #1 [40937, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40937-41131 bp Feature: gene Location: 41270-41524 bp Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 412 76-41516 bp Feature: gene Location: 41600-42919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42 179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 42 377-42 533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 42 716-42 854 bp Feature: gene Location: 44642-45586 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: gene Location: 45687-46523 bp Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-46518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVD01000046.1 (43916 bp)
Overview 1 RT 1: 4582-8961 bp Neighborhood of RT #1 [4582, 8961] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4582-5409 bp Feature: domain Description: ABC_phnC Location: 4612-5326 bp Feature: domain Description: ABC_phnC Location: 4612-53 26 bp Feature: gene Location: 5752-6393 bp Feature: domain Description: DUF772 Location: 5902-6097 bp Feature: domain Description: DUF772 Location: 5902-6097 bp Feature: gene Location: 6782-8050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7652 bp Feature: domain Description: GIIM Note: maturase Location: 7730-7952 bp Feature: domain Description: GIIM Note: maturase Location: 773 0-7952 bp Feature: gene Location: 8200-8598 bp Feature: gene Location: 8782-8961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVD01000004.1 (282125 bp)
Overview 1 RT 1: 196820-207553 bp 2 RT 2: 223811-232631 bp Neighborhood of RT #1 [196820, 207555] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223811, 232660] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196820-197035 bp Feature: domain Description: NERD Location: 196847-196970 bp Feature: domain Description: NERD Location: 19684 7-196970 bp Feature: gene Location: 197248-198369 bp Feature: domain Description: COG3177 Location: 197266-198358 bp Feature: domain Description: COG3177 Location: 197266-198358 bp Feature: gene Location: 199092-200777 bp Feature: domain Description: RVT_N Location: 199149-199389 bp Feature: domain Description: RVT_N Location: 19914 9-199389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199437-200073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994 37-200073 bp Feature: domain Description: GIIM Note: maturase Location: 200127-200358 bp Feature: domain Description: GIIM Note: maturase Location: 200127-200358 bp Feature: domain Description: HNH Note: nucleases Location: 200610-200748 bp Feature: domain Description: HNH Note: nucleases Location: 200610-20074 8 bp Feature: gene Location: 201858-205595 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201966-202623 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201966-202623 bp Feature: domain Description: PRK09776 Location: 202836-203307 bp Feature: domain Description: PRK09776 Location: 202836-203307 bp Feature: domain Description: PAS Location: 203364-203889 bp Feature: domain Description: PAS Location: 203364 -203889 bp Feature: domain Description: PRK10060 Location: 203901-205545 bp Feature: domain Description: PRK10060 Location: 203901-20554 5 bp Feature: gene Location: 205702-207555 bp Feature: domain Description: PRK05658 Location: 205714-207553 bp Feature: domain Description: PRK05658 Location: 205714 -207553 bp Feature: gene Location: 223811-225025 bp Feature: domain Description: PRK10770 Location: 223823-225017 bp Feature: domain Description: PRK10770 Location: 223823-225017 bp Feature: gene Location: 225084-227855 bp Feature: domain Description: LptD Location: 225279-227841 bp Feature: domain Description: LptD Location: 225279-22784 1 bp Feature: gene Location: 227988-229700 bp Feature: domain Description: RVT_N Location: 228045-228288 bp Feature: domain Description: RVT_N Location: 22804 5-228288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228333-228969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228333-228969 bp Feature: domain Description: YkfC Location: 229179-229329 bp Feature: domain Description: YkfC Location: 229179-229329 bp Feature: domain Description: HNH Note: nucleases Location: 229506-229644 bp Feature: domain Description: HNH Note: nucleases Location: 229506-22964 4 bp Feature: gene Location: 230973-231989 bp Feature: domain Description: COG3178 Location: 230976-231975 bp Feature: domain Description: COG3178 Location: 230976-231975 bp Feature: gene Location: 231986-232660 bp Feature: domain Description: NTP_transferase_like_1 Location: 231992-232631 bp Feature: domain Description: NTP_transferase_like_1 Location: 231992-232631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)