myRT

myRT report for GCA_005863605.1_ASM586360v1

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Seq: VAVB01000013.1 (132334 bp)
Overview 1 RT 1: 40723-46304 bp Neighborhood of RT #1 [40723, 46309] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40723-40917 bp Feature: gene Location: 41056-41310 bp Feature: domain Description: SdhE Location: 41062-41302 bp Feature: domain Description: SdhE Location: 41 062-41 302 bp Feature: gene Location: 41386-42705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41389-41965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 389-41 965 bp Feature: domain Description: YkfC Location: 42163-42319 bp Feature: domain Description: YkfC Location: 421 63-4231 9 bp Feature: domain Description: HNH Note: nucleases Location: 42502-42640 bp Feature: domain Description: HNH Note: nucleases Location: 42502-42640 bp Feature: gene Location: 44428-45372 bp Feature: domain Description: YgfZ Location: 44437-45337 bp Feature: domain Description: YgfZ Location: 44437-45337 bp Feature: gene Location: 45473-46309 bp Feature: domain Description: HDOD Location: 45476-46304 bp Feature: domain Description: HDOD Location: 45476-46304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVB01000038.1 (282070 bp)
Overview 1 RT 1: 49410-58251 bp 2 RT 2: 74515-85185 bp Neighborhood of RT #1 [49410, 58259] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74515, 85250] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49410-50084 bp Feature: domain Description: NTP_transferase_like_1 Location: 49416-50055 bp Feature: domain Description: NTP_transferase_like_1 Location: 49416-50055 bp Feature: gene Location: 50081-51097 bp Feature: domain Description: COG3178 Location: 50084-51083 bp Feature: domain Description: COG3178 Location: 50084-51083 bp Feature: gene Location: 52370-54082 bp Feature: domain Description: RVT_N Location: 52427-52670 bp Feature: domain Description: RVT_N Location: 52 42 7-52 670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52715-53351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 715-53351 bp Feature: domain Description: YkfC Location: 53561-53711 bp Feature: domain Description: YkfC Location: 53561-53711 bp Feature: domain Description: HNH Note: nucleases Location: 53888-54026 bp Feature: domain Description: HNH Note: nucleases Location: 53888-5402 6 bp Feature: gene Location: 54215-56986 bp Feature: domain Description: LptD Location: 54410-56972 bp Feature: domain Description: LptD Location: 54410-56972 bp Feature: gene Location: 57045-58259 bp Feature: domain Description: PRK10770 Location: 57057-58251 bp Feature: domain Description: PRK10770 Location: 57057-582 51 bp Feature: gene Location: 74515-76368 bp Feature: domain Description: PRK05658 Location: 74527-76366 bp Feature: domain Description: PRK05658 Location: 7452 7-76366 bp Feature: gene Location: 76475-80212 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76583-77240 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76583-772 40 bp Feature: domain Description: PRK09776 Location: 77453-77924 bp Feature: domain Description: PRK09776 Location: 77453-7792 4 bp Feature: domain Description: PAS Location: 77981-78506 bp Feature: domain Description: PAS Location: 77981-78506 bp Feature: domain Description: PRK10060 Location: 78518-80162 bp Feature: domain Description: PRK10060 Location: 78518-80162 bp Feature: gene Location: 81293-82978 bp Feature: domain Description: RVT_N Location: 81350-81590 bp Feature: domain Description: RVT_N Location: 81350-81590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81638-82274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81638-82 2 74 bp Feature: domain Description: GIIM Note: maturase Location: 82328-82559 bp Feature: domain Description: GIIM Note: maturase Location: 82 32 8-82 559 bp Feature: domain Description: HNH Note: nucleases Location: 82811-82949 bp Feature: domain Description: HNH Note: nucleases Location: 82 811-82 949 bp Feature: gene Location: 83701-84822 bp Feature: domain Description: COG3177 Location: 83719-84811 bp Feature: domain Description: COG3177 Location: 83719-84811 bp Feature: gene Location: 85035-85250 bp Feature: domain Description: NERD Location: 85062-85185 bp Feature: domain Description: NERD Location: 85062 -85185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: VAVB01000066.1 (43726 bp)
Overview 1 RT 1: 34925-39221 bp Neighborhood of RT #1 [34925, 39304] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34925-35104 bp Feature: gene Location: 35288-35686 bp Feature: gene Location: 35836-37104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36049-36706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6049-3 6706 bp Feature: domain Description: GIIM Note: maturase Location: 36784-37006 bp Feature: domain Description: GIIM Note: maturase Location: 3 6784-3 7006 bp Feature: gene Location: 37493-38134 bp Feature: domain Description: DUF772 Location: 37643-37838 bp Feature: domain Description: DUF772 Location: 3 7643 -3 783 8 bp Feature: gene Location: 38477-39304 bp Feature: domain Description: ABC_phnC Location: 38507-39221 bp Feature: domain Description: ABC_phnC Location: 3 8507-3 9221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVB01000098.1 (35910 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824 -26592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924 -30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33075-3314 4 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_21 Location: 33618-3394 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)