myRT

myRT report for GCA_005863615.1_ASM586361v1

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Seq: VAVE01000040.1 (43690 bp)
Overview 1 RT 1: 4361-8740 bp Neighborhood of RT #1 [4361, 8740] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4361-5188 bp Feature: domain Description: ABC_phnC Location: 4391-5105 bp Feature: domain Description: ABC_phnC Location: 4391 -51 05 bp Feature: gene Location: 5531-6172 bp Feature: domain Description: DUF772 Location: 5681-5876 bp Feature: domain Description: DUF772 Location: 5681 -5876 bp Feature: gene Location: 6561-7829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6774-7431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6774-7431 bp Feature: domain Description: GIIM Note: maturase Location: 7509-7731 bp Feature: domain Description: GIIM Note: maturase Location: 7509-7731 bp Feature: gene Location: 7979-8377 bp Feature: gene Location: 8561-8740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVE01000039.1 (127103 bp)
Overview 1 RT 1: 93077-98658 bp Neighborhood of RT #1 [93077, 98663] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93077-93271 bp Feature: gene Location: 93410-93664 bp Feature: domain Description: SdhE Location: 93416-93656 bp Feature: domain Description: SdhE Location: 93416-93656 bp Feature: gene Location: 93740-95059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93743-94319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93743-94319 bp Feature: domain Description: YkfC Location: 94517-94673 bp Feature: domain Description: YkfC Location: 94517-94673 bp Feature: domain Description: HNH Note: nucleases Location: 94856-94994 bp Feature: domain Description: HNH Note: nucleases Location: 94856-94994 bp Feature: gene Location: 96782-97726 bp Feature: domain Description: YgfZ Location: 96791-97691 bp Feature: domain Description: YgfZ Location: 96791-97691 bp Feature: gene Location: 97827-98663 bp Feature: domain Description: HDOD Location: 97830-98658 bp Feature: domain Description: HDOD Location: 97830-98658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVE01000089.1 (35908 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823 -26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923 -3 03 94 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 3 3 074-3 3 143 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 3 3 617-3 3 947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: VAVE01000031.1 (281938 bp)
Overview 1 RT 1: 196814-207547 bp 2 RT 2: 223805-232625 bp Neighborhood of RT #1 [196814, 207549] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223805, 232654] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196814-197029 bp Feature: domain Description: NERD Location: 196841-196964 bp Feature: domain Description: NERD Location: 19684 1-196964 bp Feature: gene Location: 197242-198363 bp Feature: domain Description: COG3177 Location: 197260-198352 bp Feature: domain Description: COG3177 Location: 197260-198352 bp Feature: gene Location: 199086-200771 bp Feature: domain Description: RVT_N Location: 199143-199383 bp Feature: domain Description: RVT_N Location: 19914 3-199383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199431-200067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994 31-200067 bp Feature: domain Description: GIIM Note: maturase Location: 200121-200352 bp Feature: domain Description: GIIM Note: maturase Location: 200121-200352 bp Feature: domain Description: HNH Note: nucleases Location: 200604-200742 bp Feature: domain Description: HNH Note: nucleases Location: 200604 -20074 2 bp Feature: gene Location: 201852-205589 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201960-202617 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201960-202617 bp Feature: domain Description: PRK09776 Location: 202830-203301 bp Feature: domain Description: PRK09776 Location: 202830-203301 bp Feature: domain Description: PAS Location: 203358-203883 bp Feature: domain Description: PAS Location: 203358-203883 bp Feature: domain Description: PRK10060 Location: 203895-205539 bp Feature: domain Description: PRK10060 Location: 203895-205539 bp Feature: gene Location: 205696-207549 bp Feature: domain Description: PRK05658 Location: 205708-207547 bp Feature: domain Description: PRK05658 Location: 205708-20754 7 bp Feature: gene Location: 223805-225019 bp Feature: domain Description: PRK10770 Location: 223817-225011 bp Feature: domain Description: PRK10770 Location: 223817-225011 bp Feature: gene Location: 225078-227849 bp Feature: domain Description: LptD Location: 225273-227835 bp Feature: domain Description: LptD Location: 225273-227835 bp Feature: gene Location: 227982-229694 bp Feature: domain Description: RVT_N Location: 228039-228282 bp Feature: domain Description: RVT_N Location: 228039-228282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228327-228963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228327-228963 bp Feature: domain Description: YkfC Location: 229173-229323 bp Feature: domain Description: YkfC Location: 229173-229323 bp Feature: domain Description: HNH Note: nucleases Location: 229500-229638 bp Feature: domain Description: HNH Note: nucleases Location: 229500-229638 bp Feature: gene Location: 230967-231983 bp Feature: domain Description: COG3178 Location: 230970-231969 bp Feature: domain Description: COG3178 Location: 230970-231969 bp Feature: gene Location: 231980-232654 bp Feature: domain Description: NTP_transferase_like_1 Location: 231986-232625 bp Feature: domain Description: NTP_transferase_like_1 Location: 231986-232625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)