myRT

myRT report for GCA_005863685.1_ASM586368v1

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Seq: VAVG01000074.1 (35908 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 2851 7-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 33074-331 43 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 3361 7-33947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: VAVG01000013.1 (75159 bp)
Overview 1 RT 1: 40937-46518 bp Neighborhood of RT #1 [40937, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40937-41131 bp Feature: gene Location: 41270-41524 bp Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 412 76-41516 bp Feature: gene Location: 41600-42919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42 179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 42 377-42 533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 42 716-42 854 bp Feature: gene Location: 44642-45586 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: gene Location: 45687-46523 bp Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-46518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVG01000014.1 (141234 bp)
Overview 1 RT 1: 49285-58126 bp 2 RT 2: 74390-88311 bp Neighborhood of RT #1 [49285, 58134] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74390, 88466] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49285-49959 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-49930 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-4993 0 bp Feature: gene Location: 49956-50972 bp Feature: domain Description: COG3178 Location: 49959-50958 bp Feature: domain Description: COG3 178 Location: 49959-50958 bp Feature: gene Location: 52245-53957 bp Feature: domain Description: RVT_N Location: 52302-52545 bp Feature: domain Description: RVT_N Location: 523 02-52545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53 226 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: YkfC Location: 53 43 6-53 586 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: domain Description: HNH Note: nucleases Location: 53 763 -53 901 bp Feature: gene Location: 54090-56861 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: gene Location: 56920-58134 bp Feature: domain Description: PRK10770 Location: 56932-58126 bp Feature: domain Description: PRK10770 Location: 5693 2-58126 bp Feature: gene Location: 74390-76243 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: gene Location: 76350-80087 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PRK09776 Location: 773 28-77799 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PAS Location: 77856-783 81 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: domain Description: PRK10060 Location: 783 93 -8003 7 bp Feature: gene Location: 81168-82853 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-82149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513 -82149 bp Feature: domain Description: GIIM Note: maturase Location: 82203-82434 bp Feature: domain Description: GIIM Note: maturase Location: 82203 -8243 4 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: gene Location: 83576-84697 bp Feature: domain Description: COG3177 Location: 83594-84686 bp Feature: domain Description: COG3 177 Location: 83 594-84686 bp Feature: gene Location: 85740-88466 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_helical Location: 86610-86937 bp Feature: domain Description: IMPa_helical Location: 86610-8693 7 bp Feature: domain Description: Peptidase_M60 Location: 87381-88311 bp Feature: domain Description: Peptidase_M60 Location: 873 81-883 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: VAVG01000045.1 (43860 bp)
Overview 1 RT 1: 34957-39253 bp Neighborhood of RT #1 [34957, 39336] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34957-35136 bp Feature: gene Location: 35320-35718 bp Feature: gene Location: 35868-37136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36081-36738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36081-36738 bp Feature: domain Description: GIIM Note: maturase Location: 36816-37038 bp Feature: domain Description: GIIM Note: maturase Location: 36816-37038 bp Feature: gene Location: 37525-38166 bp Feature: domain Description: DUF772 Location: 37675-37870 bp Feature: domain Description: DUF772 Location: 37675-37870 bp Feature: gene Location: 38509-39336 bp Feature: domain Description: ABC_phnC Location: 38539-39253 bp Feature: domain Description: ABC_phnC Location: 38539-39253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)