myRT

myRT report for GCA_005863765.1_ASM586376v1

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Seq: VAVH01000022.1 (132604 bp)
Overview 1 RT 1: 86082-91668 bp Neighborhood of RT #1 [86082, 91668] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 86082-86918 bp Feature: domain Description: HDOD Location: 86085-86913 bp Feature: domain Description: HDOD Location: 86085-8691 3 bp Feature: gene Location: 87019-87963 bp Feature: domain Description: YgfZ Location: 87028-87928 bp Feature: domain Description: YgfZ Location: 87028-87928 bp Feature: gene Location: 89686-91005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89689-90265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89689-90265 bp Feature: domain Description: YkfC Location: 90463-90619 bp Feature: domain Description: YkfC Location: 90463-9061 9 bp Feature: domain Description: HNH Note: nucleases Location: 90802-90940 bp Feature: domain Description: HNH Note: nucleases Location: 90802-90940 bp Feature: gene Location: 91081-91335 bp Feature: domain Description: SdhE Location: 91087-91327 bp Feature: domain Description: SdhE Location: 91 087-91 327 bp Feature: gene Location: 91474-91668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: VAVH01000041.1 (43921 bp)
Overview 1 RT 1: 34961-39257 bp Neighborhood of RT #1 [34961, 39340] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34961-35140 bp Feature: gene Location: 35324-35722 bp Feature: gene Location: 35872-37140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36085-36742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36085-36742 bp Feature: domain Description: GIIM Note: maturase Location: 36820-37042 bp Feature: domain Description: GIIM Note: maturase Location: 3682 0-37042 bp Feature: gene Location: 37529-38170 bp Feature: domain Description: DUF772 Location: 37679-37874 bp Feature: domain Description: DUF772 Location: 37679-37874 bp Feature: gene Location: 38513-39340 bp Feature: domain Description: ABC_phnC Location: 38543-39257 bp Feature: domain Description: ABC_phnC Location: 38543-392 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVH01000046.1 (36022 bp)
Overview 1 RT 1: 1825-9136 bp Neighborhood of RT #1 [1825, 10191] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1825-2964 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: gene Location: 2964-3521 bp Feature: gene Location: 3518-6538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013 -4484 bp Feature: gene Location: 6535-8316 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: gene Location: 8320-10191 bp Feature: domain Description: DUF262 Location: 8368-9136 bp Feature: domain Description: DUF262 Location: 83 68-913 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVH01000007.1 (282000 bp)
Overview 1 RT 1: 196819-207552 bp 2 RT 2: 223810-232630 bp Neighborhood of RT #1 [196819, 207554] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223810, 232659] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196819-197034 bp Feature: domain Description: NERD Location: 196846-196969 bp Feature: domain Description: NERD Location: 19684 6-196969 bp Feature: gene Location: 197247-198368 bp Feature: domain Description: COG3177 Location: 197265-198357 bp Feature: domain Description: COG3177 Location: 197265-198357 bp Feature: gene Location: 199091-200776 bp Feature: domain Description: RVT_N Location: 199148-199388 bp Feature: domain Description: RVT_N Location: 19914 8-199388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199436-200072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994 36-200072 bp Feature: domain Description: GIIM Note: maturase Location: 200126-200357 bp Feature: domain Description: GIIM Note: maturase Location: 200126-200357 bp Feature: domain Description: HNH Note: nucleases Location: 200609-200747 bp Feature: domain Description: HNH Note: nucleases Location: 200609-20074 7 bp Feature: gene Location: 201857-205594 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201965-202622 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201965-202622 bp Feature: domain Description: PRK09776 Location: 202835-203306 bp Feature: domain Description: PRK09776 Location: 202835-203306 bp Feature: domain Description: PAS Location: 203363-203888 bp Feature: domain Description: PAS Location: 203363-203888 bp Feature: domain Description: PRK10060 Location: 203900-205544 bp Feature: domain Description: PRK10060 Location: 203900-20554 4 bp Feature: gene Location: 205701-207554 bp Feature: domain Description: PRK05658 Location: 205713-207552 bp Feature: domain Description: PRK05658 Location: 205713-207552 bp Feature: gene Location: 223810-225024 bp Feature: domain Description: PRK10770 Location: 223822-225016 bp Feature: domain Description: PRK10770 Location: 223822-225016 bp Feature: gene Location: 225083-227854 bp Feature: domain Description: LptD Location: 225278-227840 bp Feature: domain Description: LptD Location: 225278-22784 0 bp Feature: gene Location: 227987-229699 bp Feature: domain Description: RVT_N Location: 228044-228287 bp Feature: domain Description: RVT_N Location: 22804 4 -228287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228332-228968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228332-228968 bp Feature: domain Description: YkfC Location: 229178-229328 bp Feature: domain Description: YkfC Location: 229178-229328 bp Feature: domain Description: HNH Note: nucleases Location: 229505-229643 bp Feature: domain Description: HNH Note: nucleases Location: 229505-22964 3 bp Feature: gene Location: 230972-231988 bp Feature: domain Description: COG3178 Location: 230975-231974 bp Feature: domain Description: COG3178 Location: 230975-231974 bp Feature: gene Location: 231985-232659 bp Feature: domain Description: NTP_transferase_like_1 Location: 231991-232630 bp Feature: domain Description: NTP_transferase_like_1 Location: 231991-232630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)