myRT

myRT report for GCA_005863785.1_ASM586378v1

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Seq: VAVL01000031.1 (132388 bp)
Overview 1 RT 1: 40777-46358 bp Neighborhood of RT #1 [40777, 46363] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40777-40971 bp Feature: gene Location: 41110-41364 bp Feature: domain Description: SdhE Location: 41116-41356 bp Feature: domain Description: SdhE Location: 41 1 1 6-41 356 bp Feature: gene Location: 41440-42759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41443-42019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 443-4201 9 bp Feature: domain Description: YkfC Location: 42217-42373 bp Feature: domain Description: YkfC Location: 4221 7-42373 bp Feature: domain Description: HNH Note: nucleases Location: 42556-42694 bp Feature: domain Description: HNH Note: nucleases Location: 42556-42694 bp Feature: gene Location: 44482-45426 bp Feature: domain Description: YgfZ Location: 44491-45391 bp Feature: domain Description: YgfZ Location: 44491 -45391 bp Feature: gene Location: 45527-46363 bp Feature: domain Description: HDOD Location: 45530-46358 bp Feature: domain Description: HDOD Location: 45530-46358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVL01000044.1 (141349 bp)
Overview 1 RT 1: 56224-66957 bp 2 RT 2: 83215-92035 bp Neighborhood of RT #1 [56224, 66959] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83215, 92064] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56224-56439 bp Feature: domain Description: NERD Location: 56251-56374 bp Feature: domain Description: NERD Location: 562 51-56374 bp Feature: gene Location: 56652-57773 bp Feature: domain Description: COG3177 Location: 56670-57762 bp Feature: domain Description: COG3177 Location: 56670-57762 bp Feature: gene Location: 58496-60181 bp Feature: domain Description: RVT_N Location: 58553-58793 bp Feature: domain Description: RVT_N Location: 58553-58793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58841-59477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58841-59477 bp Feature: domain Description: GIIM Note: maturase Location: 59531-59762 bp Feature: domain Description: GIIM Note: maturase Location: 59531-59762 bp Feature: domain Description: HNH Note: nucleases Location: 60014-60152 bp Feature: domain Description: HNH Note: nucleases Location: 60014-60152 bp Feature: gene Location: 61262-64999 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61370-62027 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61370-62 02 7 bp Feature: domain Description: PRK09776 Location: 62240-62711 bp Feature: domain Description: PRK09776 Location: 62 2 40-62 711 bp Feature: domain Description: PAS Location: 62768-63293 bp Feature: domain Description: PAS Location: 62 768-632 93 bp Feature: domain Description: PRK10060 Location: 63305-64949 bp Feature: domain Description: PRK10060 Location: 63305-64949 bp Feature: gene Location: 65106-66959 bp Feature: domain Description: PRK05658 Location: 65118-66957 bp Feature: domain Description: PRK05658 Location: 65118-66957 bp Feature: gene Location: 83215-84429 bp Feature: domain Description: PRK10770 Location: 83227-84421 bp Feature: domain Description: PRK10770 Location: 832 2 7-8442 1 bp Feature: gene Location: 84488-87259 bp Feature: domain Description: LptD Location: 84683-87245 bp Feature: domain Description: LptD Location: 84683-872 45 bp Feature: gene Location: 87392-89104 bp Feature: domain Description: RVT_N Location: 87449-87692 bp Feature: domain Description: RVT_N Location: 87449-87692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87737-88373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87737-88373 bp Feature: domain Description: YkfC Location: 88583-88733 bp Feature: domain Description: YkfC Location: 88583-88733 bp Feature: domain Description: HNH Note: nucleases Location: 88910-89048 bp Feature: domain Description: HNH Note: nucleases Location: 88910-89048 bp Feature: gene Location: 90377-91393 bp Feature: domain Description: COG3178 Location: 90380-91379 bp Feature: domain Description: COG3178 Location: 90380-91379 bp Feature: gene Location: 91390-92064 bp Feature: domain Description: NTP_transferase_like_1 Location: 91396-92035 bp Feature: domain Description: NTP_transferase_like_1 Location: 91396-92 035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAVL01000080.1 (43860 bp)
Overview 1 RT 1: 4526-8905 bp Neighborhood of RT #1 [4526, 8905] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4526-5353 bp Feature: domain Description: ABC_phnC Location: 4556-5270 bp Feature: domain Description: ABC_phnC Location: 4556-5270 bp Feature: gene Location: 5696-6337 bp Feature: domain Description: DUF772 Location: 5846-6041 bp Feature: domain Description: DUF772 Location: 5846-6041 bp Feature: gene Location: 6726-7994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6939-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 9-7596 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7896 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7896 bp Feature: gene Location: 8144-8542 bp Feature: gene Location: 8726-8905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVL01000096.1 (35909 bp)
Overview 1 RT 1: 1768-9079 bp Neighborhood of RT #1 [1768, 10134] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1768-2907 bp Feature: domain Description: AAA_21 Location: 1840-1909 bp Feature: domain Description: AAA_21 Location: 184 0-1909 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: gene Location: 2907-3464 bp Feature: gene Location: 3461-6481 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4 4 27 bp Feature: gene Location: 6478-8259 bp Feature: domain Description: YeeA Location: 7345-8125 bp Feature: domain Description: YeeA Location: 734 5-8125 bp Feature: gene Location: 8263-10134 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)