myRT

myRT report for GCA_005863795.1_ASM586379v1

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Seq: VAVM01000049.1 (36022 bp)
Overview 1 RT 1: 25832-34004 bp Neighborhood of RT #1 [25832, 34198] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25832-27703 bp Feature: domain Description: DUF262 Location: 25880-26648 bp Feature: domain Description: DUF262 Location: 25880-26648 bp Feature: gene Location: 27707-29488 bp Feature: domain Description: YeeA Location: 28574-29354 bp Feature: domain Description: YeeA Location: 28574-29354 bp Feature: gene Location: 29485-32505 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29980-30451 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29980-30451 bp Feature: gene Location: 32502-33059 bp Feature: gene Location: 33059-34198 bp Feature: domain Description: AAA_21 Location: 33131-33200 bp Feature: domain Description: AAA_21 Location: 331 31 -33200 bp Feature: domain Description: AAA_21 Location: 33674-34004 bp Feature: domain Description: AAA_21 Location: 33674-34004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: VAVM01000014.1 (184801 bp)
Overview 1 RT 1: 93134-98715 bp Neighborhood of RT #1 [93134, 98720] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93134-93328 bp Feature: gene Location: 93467-93721 bp Feature: domain Description: SdhE Location: 93473-93713 bp Feature: domain Description: SdhE Location: 93473-93713 bp Feature: gene Location: 93797-95116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93800-94376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93800-94376 bp Feature: domain Description: YkfC Location: 94574-94730 bp Feature: domain Description: YkfC Location: 94574-94730 bp Feature: domain Description: HNH Note: nucleases Location: 94913-95051 bp Feature: domain Description: HNH Note: nucleases Location: 94913-95051 bp Feature: gene Location: 96839-97783 bp Feature: domain Description: YgfZ Location: 96848-97748 bp Feature: domain Description: YgfZ Location: 96848-97748 bp Feature: gene Location: 97884-98720 bp Feature: domain Description: HDOD Location: 97887-98715 bp Feature: domain Description: HDOD Location: 97887-98715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVM01000045.1 (43917 bp)
Overview 1 RT 1: 4582-8961 bp Neighborhood of RT #1 [4582, 8961] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4582-5409 bp Feature: domain Description: ABC_phnC Location: 4612-5326 bp Feature: domain Description: ABC_phnC Location: 4612-53 26 bp Feature: gene Location: 5752-6393 bp Feature: domain Description: DUF772 Location: 5902-6097 bp Feature: domain Description: DUF772 Location: 5902-6097 bp Feature: gene Location: 6782-8050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7652 bp Feature: domain Description: GIIM Note: maturase Location: 7730-7952 bp Feature: domain Description: GIIM Note: maturase Location: 773 0-7952 bp Feature: gene Location: 8200-8598 bp Feature: gene Location: 8782-8961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVM01000006.1 (282385 bp)
Overview 1 RT 1: 196824-207557 bp 2 RT 2: 223815-232635 bp Neighborhood of RT #1 [196824, 207559] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223815, 232664] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196824-197039 bp Feature: domain Description: NERD Location: 196851-196974 bp Feature: domain Description: NERD Location: 196851-196974 bp Feature: gene Location: 197252-198373 bp Feature: domain Description: COG3177 Location: 197270-198362 bp Feature: domain Description: COG3177 Location: 197270-198362 bp Feature: gene Location: 199096-200781 bp Feature: domain Description: RVT_N Location: 199153-199393 bp Feature: domain Description: RVT_N Location: 199153-199393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199441-200077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994 4 1-200077 bp Feature: domain Description: GIIM Note: maturase Location: 200131-200362 bp Feature: domain Description: GIIM Note: maturase Location: 200131-200362 bp Feature: domain Description: HNH Note: nucleases Location: 200614-200752 bp Feature: domain Description: HNH Note: nucleases Location: 200614 -200752 bp Feature: gene Location: 201862-205599 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201970-202627 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201970-202627 bp Feature: domain Description: PRK09776 Location: 202840-203311 bp Feature: domain Description: PRK09776 Location: 20284 0-203311 bp Feature: domain Description: PAS Location: 203368-203893 bp Feature: domain Description: PAS Location: 203368-203893 bp Feature: domain Description: PRK10060 Location: 203905-205549 bp Feature: domain Description: PRK10060 Location: 203905-20554 9 bp Feature: gene Location: 205706-207559 bp Feature: domain Description: PRK05658 Location: 205718-207557 bp Feature: domain Description: PRK05658 Location: 205718-207557 bp Feature: gene Location: 223815-225029 bp Feature: domain Description: PRK10770 Location: 223827-225021 bp Feature: domain Description: PRK10770 Location: 223827-225021 bp Feature: gene Location: 225088-227859 bp Feature: domain Description: LptD Location: 225283-227845 bp Feature: domain Description: LptD Location: 225283-22784 5 bp Feature: gene Location: 227992-229704 bp Feature: domain Description: RVT_N Location: 228049-228292 bp Feature: domain Description: RVT_N Location: 22804 9-228292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228337-228973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228337-228973 bp Feature: domain Description: YkfC Location: 229183-229333 bp Feature: domain Description: YkfC Location: 229183-229333 bp Feature: domain Description: HNH Note: nucleases Location: 229510-229648 bp Feature: domain Description: HNH Note: nucleases Location: 229510-22964 8 bp Feature: gene Location: 230977-231993 bp Feature: domain Description: COG3178 Location: 230980-231979 bp Feature: domain Description: COG3178 Location: 230980-231979 bp Feature: gene Location: 231990-232664 bp Feature: domain Description: NTP_transferase_like_1 Location: 231996-232635 bp Feature: domain Description: NTP_transferase_like_1 Location: 231996-232635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)