myRT

myRT report for GCA_005863805.1_ASM586380v1

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Seq: VAVO01000006.1 (282381 bp)
Overview 1 RT 1: 49722-58563 bp 2 RT 2: 74827-85497 bp Neighborhood of RT #1 [49722, 58571] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74827, 85562] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49722-50396 bp Feature: domain Description: NTP_transferase_like_1 Location: 49728-50367 bp Feature: domain Description: NTP_transferase_like_1 Location: 49728-50367 bp Feature: gene Location: 50393-51409 bp Feature: domain Description: COG3178 Location: 50396-51395 bp Feature: domain Description: COG31 78 Location: 50396-51 395 bp Feature: gene Location: 52682-54394 bp Feature: domain Description: RVT_N Location: 52739-52982 bp Feature: domain Description: RVT_N Location: 52739-52982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: domain Description: YkfC Location: 53873-54023 bp Feature: domain Description: YkfC Location: 53873-54023 bp Feature: domain Description: HNH Note: nucleases Location: 54200-54338 bp Feature: domain Description: HNH Note: nucleases Location: 54200-54338 bp Feature: gene Location: 54527-57298 bp Feature: domain Description: LptD Location: 54722-57284 bp Feature: domain Description: LptD Location: 54722-57284 bp Feature: gene Location: 57357-58571 bp Feature: domain Description: PRK10770 Location: 57369-58563 bp Feature: domain Description: PRK1 0770 Location: 57369-58563 bp Feature: gene Location: 74827-76680 bp Feature: domain Description: PRK05658 Location: 74839-76678 bp Feature: domain Description: PRK05658 Location: 74839-76678 bp Feature: gene Location: 76787-80524 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76895-77552 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76895-77552 bp Feature: domain Description: PRK09776 Location: 77765-78236 bp Feature: domain Description: PRK09776 Location: 77765-78236 bp Feature: domain Description: PAS Location: 78293-78818 bp Feature: domain Description: PAS Location: 78293-7881 8 bp Feature: domain Description: PRK10060 Location: 78830-80474 bp Feature: domain Description: PRK1 0060 Location: 78830-80474 bp Feature: gene Location: 81605-83290 bp Feature: domain Description: RVT_N Location: 81662-81902 bp Feature: domain Description: RVT_N Location: 81 662-81 902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81950-82586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 950-82586 bp Feature: domain Description: GIIM Note: maturase Location: 82640-82871 bp Feature: domain Description: GIIM Note: maturase Location: 82640-82871 bp Feature: domain Description: HNH Note: nucleases Location: 83123-83261 bp Feature: domain Description: HNH Note: nucleases Location: 831 23-83261 bp Feature: gene Location: 84013-85134 bp Feature: domain Description: COG3177 Location: 84031-85123 bp Feature: domain Description: COG31 77 Location: 84031 -851 23 bp Feature: gene Location: 85347-85562 bp Feature: domain Description: NERD Location: 85374-85497 bp Feature: domain Description: NERD Location: 85374-85497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: VAVO01000050.1 (36022 bp)
Overview 1 RT 1: 25832-34004 bp Neighborhood of RT #1 [25832, 34198] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25832-27703 bp Feature: domain Description: DUF262 Location: 25880-26648 bp Feature: domain Description: DUF2 62 Location: 2 5880-2 6648 bp Feature: gene Location: 27707-29488 bp Feature: domain Description: YeeA Location: 28574-29354 bp Feature: domain Description: YeeA Location: 2 8574-2 9354 bp Feature: gene Location: 29485-32505 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29980-30451 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9980-30451 bp Feature: gene Location: 32502-33059 bp Feature: gene Location: 33059-34198 bp Feature: domain Description: AAA_21 Location: 33131-33200 bp Feature: domain Description: AAA_2 1 Location: 33131-332 00 bp Feature: domain Description: AAA_21 Location: 33674-34004 bp Feature: domain Description: AAA_2 1 Location: 33674-34004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: VAVO01000046.1 (43916 bp)
Overview 1 RT 1: 34956-39252 bp Neighborhood of RT #1 [34956, 39335] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34956-35135 bp Feature: gene Location: 35319-35717 bp Feature: gene Location: 35867-37135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6080-3 673 7 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: domain Description: GIIM Note: maturase Location: 3 6815-3 703 7 bp Feature: gene Location: 37524-38165 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: domain Description: DUF772 Location: 3 7674-3 7869 bp Feature: gene Location: 38508-39335 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Feature: domain Description: ABC_phnC Location: 3 853 8-3 9252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVO01000011.1 (184801 bp)
Overview 1 RT 1: 86082-91668 bp Neighborhood of RT #1 [86082, 91668] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 86082-86918 bp Feature: domain Description: HDOD Location: 86085-86913 bp Feature: domain Description: HDOD Location: 86085-86913 bp Feature: gene Location: 87019-87963 bp Feature: domain Description: YgfZ Location: 87028-87928 bp Feature: domain Description: YgfZ Location: 87028-87928 bp Feature: gene Location: 89686-91005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89689-90265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89689-90265 bp Feature: domain Description: YkfC Location: 90463-90619 bp Feature: domain Description: YkfC Location: 904 63-90619 bp Feature: domain Description: HNH Note: nucleases Location: 90802-90940 bp Feature: domain Description: HNH Note: nucleases Location: 90802-9094 0 bp Feature: gene Location: 91081-91335 bp Feature: domain Description: SdhE Location: 91087-91327 bp Feature: domain Description: SdhE Location: 91087-91327 bp Feature: gene Location: 91474-91668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)