myRT

myRT report for GCA_005863835.1_ASM586383v1

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Seq: VAVN01000053.1 (36022 bp)
Overview 1 RT 1: 1825-9136 bp Neighborhood of RT #1 [1825, 10191] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1825-2964 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 1 897-1 966 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: gene Location: 2964-3521 bp Feature: gene Location: 3518-6538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 401 3-4484 bp Feature: gene Location: 6535-8316 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: domain Description: YeeA Location: 7402-81 82 bp Feature: gene Location: 8320-10191 bp Feature: domain Description: DUF262 Location: 8368-9136 bp Feature: domain Description: DUF262 Location: 8368-91 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVN01000005.1 (282362 bp)
Overview 1 RT 1: 196801-207534 bp 2 RT 2: 223792-232612 bp Neighborhood of RT #1 [196801, 207536] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [223792, 232641] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 196801-197016 bp Feature: domain Description: NERD Location: 196828-196951 bp Feature: domain Description: NERD Location: 19682 8-196951 bp Feature: gene Location: 197229-198350 bp Feature: domain Description: COG3177 Location: 197247-198339 bp Feature: domain Description: COG3177 Location: 1972 47-198339 bp Feature: gene Location: 199073-200758 bp Feature: domain Description: RVT_N Location: 199130-199370 bp Feature: domain Description: RVT_N Location: 199130-199370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199418-200054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199418-2 00054 bp Feature: domain Description: GIIM Note: maturase Location: 200108-200339 bp Feature: domain Description: GIIM Note: maturase Location: 2 00108-2 00339 bp Feature: domain Description: HNH Note: nucleases Location: 200591-200729 bp Feature: domain Description: HNH Note: nucleases Location: 2 00591-2 0072 9 bp Feature: gene Location: 201839-205576 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 201947-202604 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 01947-2 02 604 bp Feature: domain Description: PRK09776 Location: 202817-203288 bp Feature: domain Description: PRK09776 Location: 2 02 817-2 032 88 bp Feature: domain Description: PAS Location: 203345-203870 bp Feature: domain Description: PAS Location: 2 03345-2 03870 bp Feature: domain Description: PRK10060 Location: 203882-205526 bp Feature: domain Description: PRK10060 Location: 2 03882 -2 0552 6 bp Feature: gene Location: 205683-207536 bp Feature: domain Description: PRK05658 Location: 205695-207534 bp Feature: domain Description: PRK05658 Location: 2 05695-2 07534 bp Feature: gene Location: 223792-225006 bp Feature: domain Description: PRK10770 Location: 223804-224998 bp Feature: domain Description: PRK10770 Location: 2 2 3804-2 2 4998 bp Feature: gene Location: 225065-227836 bp Feature: domain Description: LptD Location: 225260-227822 bp Feature: domain Description: LptD Location: 2 2 52 60-2 2 782 2 bp Feature: gene Location: 227969-229681 bp Feature: domain Description: RVT_N Location: 228026-228269 bp Feature: domain Description: RVT_N Location: 2 2 802 6-2 2 82 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228314-228950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 8314-2 2 8950 bp Feature: domain Description: YkfC Location: 229160-229310 bp Feature: domain Description: YkfC Location: 2 2 9160-2 2 9310 bp Feature: domain Description: HNH Note: nucleases Location: 229487-229625 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 9487-2 2 962 5 bp Feature: gene Location: 230954-231970 bp Feature: domain Description: COG3178 Location: 230957-231956 bp Feature: domain Description: COG3178 Location: 2 30957-2 31956 bp Feature: gene Location: 231967-232641 bp Feature: domain Description: NTP_transferase_like_1 Location: 231973-232612 bp Feature: domain Description: NTP_transferase_like_1 Location: 2 31973-2 32 612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAVN01000020.1 (132599 bp)
Overview 1 RT 1: 40932-46513 bp Neighborhood of RT #1 [40932, 46518] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40932-41126 bp Feature: gene Location: 41265-41519 bp Feature: domain Description: SdhE Location: 41271-41511 bp Feature: domain Description: SdhE Location: 41271-41511 bp Feature: gene Location: 41595-42914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41598-42174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41598-42174 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: YkfC Location: 423 72-42528 bp Feature: domain Description: HNH Note: nucleases Location: 42711-42849 bp Feature: domain Description: HNH Note: nucleases Location: 42711-42849 bp Feature: gene Location: 44637-45581 bp Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: gene Location: 45682-46518 bp Feature: domain Description: HDOD Location: 45685-46513 bp Feature: domain Description: HDOD Location: 45685-46513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVN01000050.1 (43916 bp)
Overview 1 RT 1: 34956-39252 bp Neighborhood of RT #1 [34956, 39335] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34956-35135 bp Feature: gene Location: 35319-35717 bp Feature: gene Location: 35867-37135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: gene Location: 37524-38165 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: domain Description: DUF772 Location: 37674 -37869 bp Feature: gene Location: 38508-39335 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)