myRT

myRT report for GCA_005863855.1_ASM586385v1

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Seq: VAVP01000043.1 (131609 bp)
Overview 1 RT 1: 86026-91612 bp Neighborhood of RT #1 [86026, 91612] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 86026-86862 bp Feature: domain Description: HDOD Location: 86029-86857 bp Feature: domain Description: HDOD Location: 86029-86857 bp Feature: gene Location: 86963-87907 bp Feature: domain Description: YgfZ Location: 86972-87872 bp Feature: domain Description: YgfZ Location: 86972-87872 bp Feature: gene Location: 89630-90949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89633-90209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89633-90209 bp Feature: domain Description: YkfC Location: 90407-90563 bp Feature: domain Description: YkfC Location: 90407-90563 bp Feature: domain Description: HNH Note: nucleases Location: 90746-90884 bp Feature: domain Description: HNH Note: nucleases Location: 90746-90884 bp Feature: gene Location: 91025-91279 bp Feature: domain Description: SdhE Location: 91031-91271 bp Feature: domain Description: SdhE Location: 91 031 -91 271 bp Feature: gene Location: 91418-91612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: VAVP01000071.1 (37071 bp)
Overview 1 RT 1: 3-2924 bp Neighborhood of RT #1 [3, 2924] RVT-GII GIIM Feature: gene Location: 3-209 bp Feature: gene Location: 745-2013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1915 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1915 bp Feature: gene Location: 2163-2561 bp Feature: gene Location: 2745-2924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VAVP01000020.1 (82948 bp)
Overview 1 RT 1: 95-8556 bp 2 RT 2: 24814-33634 bp Neighborhood of RT #1 [95, 8558] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [24814, 33663] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 95-1780 bp Feature: domain Description: RVT_N Location: 152-392 bp Feature: domain Description: RVT_N Location: 152-3 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-1076 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1361 bp Feature: domain Description: GIIM Note: maturase Location: 113 0-13 61 bp Feature: domain Description: HNH Note: nucleases Location: 1613-1751 bp Feature: domain Description: HNH Note: nucleases Location: 1613 -1751 bp Feature: gene Location: 2861-6598 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2969-3626 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2969-3 626 bp Feature: domain Description: PRK09776 Location: 3839-4310 bp Feature: domain Description: PRK09776 Location: 3 83 9-43 10 bp Feature: domain Description: PAS Location: 4367-4892 bp Feature: domain Description: PAS Location: 43 67-4892 bp Feature: domain Description: PRK10060 Location: 4904-6548 bp Feature: domain Description: PRK10060 Location: 4904-6548 bp Feature: gene Location: 6705-8558 bp Feature: domain Description: PRK05658 Location: 6717-8556 bp Feature: domain Description: PRK05658 Location: 6717-8556 bp Feature: gene Location: 24814-26028 bp Feature: domain Description: PRK10770 Location: 24826-26020 bp Feature: domain Description: PRK10770 Location: 24826-26020 bp Feature: gene Location: 26087-28858 bp Feature: domain Description: LptD Location: 26282-28844 bp Feature: domain Description: LptD Location: 26282-28844 bp Feature: gene Location: 28991-30703 bp Feature: domain Description: RVT_N Location: 29048-29291 bp Feature: domain Description: RVT_N Location: 29048-29291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29336-29972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 3 6-29972 bp Feature: domain Description: YkfC Location: 30182-30332 bp Feature: domain Description: YkfC Location: 3 0182-3 03 3 2 bp Feature: domain Description: HNH Note: nucleases Location: 30509-30647 bp Feature: domain Description: HNH Note: nucleases Location: 3 0509-3 0647 bp Feature: gene Location: 31976-32992 bp Feature: domain Description: COG3178 Location: 31979-32978 bp Feature: domain Description: COG3 178 Location: 3 1979-3 2978 bp Feature: gene Location: 32989-33663 bp Feature: domain Description: NTP_transferase_like_1 Location: 32995-33634 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 2995-3 3 63 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAVP01000084.1 (16483 bp)
Overview 1 RT 1: 6349-14521 bp Neighborhood of RT #1 [6349, 14715] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 6349-8220 bp Feature: domain Description: DUF262 Location: 6397-7165 bp Feature: domain Description: DUF262 Location: 6397-7165 bp Feature: gene Location: 8224-10005 bp Feature: domain Description: YeeA Location: 9091-9871 bp Feature: domain Description: YeeA Location: 9091-9871 bp Feature: gene Location: 10002-13022 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10497-10968 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 104 97-10968 bp Feature: gene Location: 13019-13576 bp Feature: gene Location: 13576-14715 bp Feature: domain Description: AAA_21 Location: 13648-13717 bp Feature: domain Description: AAA_21 Location: 1364 8-13717 bp Feature: domain Description: AAA_21 Location: 14191-14521 bp Feature: domain Description: AAA_21 Location: 14 191-14 521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)