myRT

myRT report for GCA_005863885.1_ASM586388v1

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Seq: VAVR01000013.1 (185261 bp)
Overview 1 RT 1: 93134-98715 bp Neighborhood of RT #1 [93134, 98720] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93134-93328 bp Feature: gene Location: 93467-93721 bp Feature: domain Description: SdhE Location: 93473-93713 bp Feature: domain Description: SdhE Location: 93473-9371 3 bp Feature: gene Location: 93797-95116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93800-94376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93800-94376 bp Feature: domain Description: YkfC Location: 94574-94730 bp Feature: domain Description: YkfC Location: 94574-94730 bp Feature: domain Description: HNH Note: nucleases Location: 94913-95051 bp Feature: domain Description: HNH Note: nucleases Location: 9491 3-95051 bp Feature: gene Location: 96839-97783 bp Feature: domain Description: YgfZ Location: 96848-97748 bp Feature: domain Description: YgfZ Location: 96848-97748 bp Feature: gene Location: 97884-98720 bp Feature: domain Description: HDOD Location: 97887-98715 bp Feature: domain Description: HDOD Location: 97887-9871 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVR01000042.1 (43916 bp)
Overview 1 RT 1: 4582-8961 bp Neighborhood of RT #1 [4582, 8961] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4582-5409 bp Feature: domain Description: ABC_phnC Location: 4612-5326 bp Feature: domain Description: ABC_phnC Location: 4612 -532 6 bp Feature: gene Location: 5752-6393 bp Feature: domain Description: DUF772 Location: 5902-6097 bp Feature: domain Description: DUF772 Location: 5902 -6097 bp Feature: gene Location: 6782-8050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7652 bp Feature: domain Description: GIIM Note: maturase Location: 7730-7952 bp Feature: domain Description: GIIM Note: maturase Location: 7730-7952 bp Feature: gene Location: 8200-8598 bp Feature: gene Location: 8782-8961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVR01000049.1 (36022 bp)
Overview 1 RT 1: 1825-9136 bp Neighborhood of RT #1 [1825, 10191] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1825-2964 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: gene Location: 2964-3521 bp Feature: gene Location: 3518-6538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013 -4484 bp Feature: gene Location: 6535-8316 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: gene Location: 8320-10191 bp Feature: domain Description: DUF262 Location: 8368-9136 bp Feature: domain Description: DUF262 Location: 83 68-913 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVR01000006.1 (282389 bp)
Overview 1 RT 1: 49722-58563 bp 2 RT 2: 74827-85497 bp Neighborhood of RT #1 [49722, 58571] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74827, 85562] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49722-50396 bp Feature: domain Description: NTP_transferase_like_1 Location: 49728-50367 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9728-50367 bp Feature: gene Location: 50393-51409 bp Feature: domain Description: COG3178 Location: 50396-51395 bp Feature: domain Description: COG3178 Location: 50396-51395 bp Feature: gene Location: 52682-54394 bp Feature: domain Description: RVT_N Location: 52739-52982 bp Feature: domain Description: RVT_N Location: 52739-52982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: domain Description: YkfC Location: 53873-54023 bp Feature: domain Description: YkfC Location: 53873-54 023 bp Feature: domain Description: HNH Note: nucleases Location: 54200-54338 bp Feature: domain Description: HNH Note: nucleases Location: 54 200-54 338 bp Feature: gene Location: 54527-57298 bp Feature: domain Description: LptD Location: 54722-57284 bp Feature: domain Description: LptD Location: 54 722-57284 bp Feature: gene Location: 57357-58571 bp Feature: domain Description: PRK10770 Location: 57369-58563 bp Feature: domain Description: PRK10770 Location: 57369-58563 bp Feature: gene Location: 74827-76680 bp Feature: domain Description: PRK05658 Location: 74839-76678 bp Feature: domain Description: PRK05658 Location: 74 839-76678 bp Feature: gene Location: 76787-80524 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76895-77552 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76895-77552 bp Feature: domain Description: PRK09776 Location: 77765-78236 bp Feature: domain Description: PRK09776 Location: 77765-78236 bp Feature: domain Description: PAS Location: 78293-78818 bp Feature: domain Description: PAS Location: 78293-78818 bp Feature: domain Description: PRK10060 Location: 78830-80474 bp Feature: domain Description: PRK10060 Location: 78830-804 74 bp Feature: gene Location: 81605-83290 bp Feature: domain Description: RVT_N Location: 81662-81902 bp Feature: domain Description: RVT_N Location: 81662-81902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81950-82586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81950-82586 bp Feature: domain Description: GIIM Note: maturase Location: 82640-82871 bp Feature: domain Description: GIIM Note: maturase Location: 8264 0-82871 bp Feature: domain Description: HNH Note: nucleases Location: 83123-83261 bp Feature: domain Description: HNH Note: nucleases Location: 83123-83261 bp Feature: gene Location: 84013-85134 bp Feature: domain Description: COG3177 Location: 84031-85123 bp Feature: domain Description: COG3177 Location: 84 031-85123 bp Feature: gene Location: 85347-85562 bp Feature: domain Description: NERD Location: 85374-85497 bp Feature: domain Description: NERD Location: 85374 -854 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)