myRT

myRT report for GCA_005863895.1_ASM586389v1

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Seq: VAVQ01000033.1 (141236 bp)
Overview 1 RT 1: 56111-66844 bp 2 RT 2: 83102-91922 bp Neighborhood of RT #1 [56111, 66846] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83102, 91951] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56111-56326 bp Feature: domain Description: NERD Location: 56138-56261 bp Feature: domain Description: NERD Location: 561 38-56261 bp Feature: gene Location: 56539-57660 bp Feature: domain Description: COG3177 Location: 56557-57649 bp Feature: domain Description: COG31 77 Location: 56557-57649 bp Feature: gene Location: 58383-60068 bp Feature: domain Description: RVT_N Location: 58440-58680 bp Feature: domain Description: RVT_N Location: 58440-58680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58728-59364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58728-59364 bp Feature: domain Description: GIIM Note: maturase Location: 59418-59649 bp Feature: domain Description: GIIM Note: maturase Location: 5941 8-59649 bp Feature: domain Description: HNH Note: nucleases Location: 59901-60039 bp Feature: domain Description: HNH Note: nucleases Location: 59901 -60039 bp Feature: gene Location: 61149-64886 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61257-61914 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 257-61 91 4 bp Feature: domain Description: PRK09776 Location: 62127-62598 bp Feature: domain Description: PRK09776 Location: 621 27-62598 bp Feature: domain Description: PAS Location: 62655-63180 bp Feature: domain Description: PAS Location: 62655-631 80 bp Feature: domain Description: PRK10060 Location: 63192-64836 bp Feature: domain Description: PRK1 0060 Location: 631 92-64836 bp Feature: gene Location: 64993-66846 bp Feature: domain Description: PRK05658 Location: 65005-66844 bp Feature: domain Description: PRK05658 Location: 65005-66844 bp Feature: gene Location: 83102-84316 bp Feature: domain Description: PRK10770 Location: 83114-84308 bp Feature: domain Description: PRK1 0770 Location: 831 1 4-84308 bp Feature: gene Location: 84375-87146 bp Feature: domain Description: LptD Location: 84570-87132 bp Feature: domain Description: LptD Location: 84570-871 32 bp Feature: gene Location: 87279-88991 bp Feature: domain Description: RVT_N Location: 87336-87579 bp Feature: domain Description: RVT_N Location: 87336-87579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87624-88260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87624-88260 bp Feature: domain Description: YkfC Location: 88470-88620 bp Feature: domain Description: YkfC Location: 88470-88620 bp Feature: domain Description: HNH Note: nucleases Location: 88797-88935 bp Feature: domain Description: HNH Note: nucleases Location: 88797-88935 bp Feature: gene Location: 90264-91280 bp Feature: domain Description: COG3178 Location: 90267-91266 bp Feature: domain Description: COG31 78 Location: 90267-91 266 bp Feature: gene Location: 91277-91951 bp Feature: domain Description: NTP_transferase_like_1 Location: 91283-91922 bp Feature: domain Description: NTP_transferase_like_1 Location: 91 283-91 922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAVQ01000063.1 (43860 bp)
Overview 1 RT 1: 34956-39252 bp Neighborhood of RT #1 [34956, 39335] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34956-35135 bp Feature: gene Location: 35319-35717 bp Feature: gene Location: 35867-37135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: gene Location: 37524-38165 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: gene Location: 38508-39335 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Feature: domain Description: ABC_phnC Location: 38538-392 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVQ01000067.1 (35910 bp)
Overview 1 RT 1: 1769-9080 bp Neighborhood of RT #1 [1769, 10135] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1769-2908 bp Feature: domain Description: AAA_21 Location: 1841-1910 bp Feature: domain Description: AAA_21 Location: 1841-1910 bp Feature: domain Description: AAA_21 Location: 2384-2714 bp Feature: domain Description: AAA_21 Location: 23 84-2714 bp Feature: gene Location: 2908-3465 bp Feature: gene Location: 3462-6482 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3957-4428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 957-4428 bp Feature: gene Location: 6479-8260 bp Feature: domain Description: YeeA Location: 7346-8126 bp Feature: domain Description: YeeA Location: 73 46-8126 bp Feature: gene Location: 8264-10135 bp Feature: domain Description: DUF262 Location: 8312-9080 bp Feature: domain Description: DUF262 Location: 83 12-9080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVQ01000020.1 (132431 bp)
Overview 1 RT 1: 40820-46401 bp Neighborhood of RT #1 [40820, 46406] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40820-41014 bp Feature: gene Location: 41153-41407 bp Feature: domain Description: SdhE Location: 41159-41399 bp Feature: domain Description: SdhE Location: 4 1159-4 1399 bp Feature: gene Location: 41483-42802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41486-42062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 14 86-4 2062 bp Feature: domain Description: YkfC Location: 42260-42416 bp Feature: domain Description: YkfC Location: 4 2260-4 24 16 bp Feature: domain Description: HNH Note: nucleases Location: 42599-42737 bp Feature: domain Description: HNH Note: nucleases Location: 4 2599-4 2737 bp Feature: gene Location: 44525-45469 bp Feature: domain Description: YgfZ Location: 44534-45434 bp Feature: domain Description: YgfZ Location: 4 4 534 -4 54 34 bp Feature: gene Location: 45570-46406 bp Feature: domain Description: HDOD Location: 45573-46401 bp Feature: domain Description: HDOD Location: 4 5573-4 64 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)