myRT

myRT report for GCA_005863925.1_ASM586392v1

Download annotations/find similar RTs

Seq: VAVS01000089.1 (40998 bp)
Overview 1 RT 1: 32094-36390 bp Neighborhood of RT #1 [32094, 36473] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 32094-32273 bp Feature: gene Location: 32457-32855 bp Feature: gene Location: 33005-34273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33218-33875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3321 8-33875 bp Feature: domain Description: GIIM Note: maturase Location: 33953-34175 bp Feature: domain Description: GIIM Note: maturase Location: 33953-341 75 bp Feature: gene Location: 34662-35303 bp Feature: domain Description: DUF772 Location: 34812-35007 bp Feature: domain Description: DUF772 Location: 3481 2-35007 bp Feature: gene Location: 35646-36473 bp Feature: domain Description: ABC_phnC Location: 35676-36390 bp Feature: domain Description: ABC_phnC Location: 35676-36390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVS01000021.1 (230670 bp)
Overview 1 RT 1: 49286-58127 bp 2 RT 2: 74391-85061 bp Neighborhood of RT #1 [49286, 58135] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74391, 85126] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49286-49960 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-49931 bp Feature: domain Description: NTP_transferase_like_1 Location: 492 92 -49931 bp Feature: gene Location: 49957-50973 bp Feature: domain Description: COG3178 Location: 49960-50959 bp Feature: domain Description: COG3178 Location: 49960-50959 bp Feature: gene Location: 52246-53958 bp Feature: domain Description: RVT_N Location: 52303-52546 bp Feature: domain Description: RVT_N Location: 52 303-52 546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591-53227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 591-532 2 7 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: gene Location: 54091-56862 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: domain Description: LptD Location: 542 86-56848 bp Feature: gene Location: 56921-58135 bp Feature: domain Description: PRK10770 Location: 56933-58127 bp Feature: domain Description: PRK10770 Location: 56933-5812 7 bp Feature: gene Location: 74391-76244 bp Feature: domain Description: PRK05658 Location: 74403-76242 bp Feature: domain Description: PRK05658 Location: 74403-762 42 bp Feature: gene Location: 76351-80088 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-77116 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76459-77116 bp Feature: domain Description: PRK09776 Location: 77329-77800 bp Feature: domain Description: PRK09776 Location: 7732 9-77800 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PRK10060 Location: 78394-80038 bp Feature: domain Description: PRK10060 Location: 78394-80038 bp Feature: gene Location: 81169-82854 bp Feature: domain Description: RVT_N Location: 81226-81466 bp Feature: domain Description: RVT_N Location: 812 2 6-81466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81514-82150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81514-82 150 bp Feature: domain Description: GIIM Note: maturase Location: 82204-82435 bp Feature: domain Description: GIIM Note: maturase Location: 82 2 04-82 435 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: domain Description: HNH Note: nucleases Location: 82 687-82 82 5 bp Feature: gene Location: 83577-84698 bp Feature: domain Description: COG3177 Location: 83595-84687 bp Feature: domain Description: COG3177 Location: 83595-84687 bp Feature: gene Location: 84911-85126 bp Feature: domain Description: NERD Location: 84938-85061 bp Feature: domain Description: NERD Location: 84938-85061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: VAVS01000124.1 (35910 bp)
Overview 1 RT 1: 1769-9080 bp Neighborhood of RT #1 [1769, 10135] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1769-2908 bp Feature: domain Description: AAA_21 Location: 1841-1910 bp Feature: domain Description: AAA_21 Location: 1841-1910 bp Feature: domain Description: AAA_21 Location: 2384-2714 bp Feature: domain Description: AAA_21 Location: 23 84-2714 bp Feature: gene Location: 2908-3465 bp Feature: gene Location: 3462-6482 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3957-4428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 957-4428 bp Feature: gene Location: 6479-8260 bp Feature: domain Description: YeeA Location: 7346-8126 bp Feature: domain Description: YeeA Location: 73 46-8126 bp Feature: gene Location: 8264-10135 bp Feature: domain Description: DUF262 Location: 8312-9080 bp Feature: domain Description: DUF262 Location: 83 12-9080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVS01000041.1 (132351 bp)
Overview 1 RT 1: 86026-91612 bp Neighborhood of RT #1 [86026, 91612] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 86026-86862 bp Feature: domain Description: HDOD Location: 86029-86857 bp Feature: domain Description: HDOD Location: 86029-86857 bp Feature: gene Location: 86963-87907 bp Feature: domain Description: YgfZ Location: 86972-87872 bp Feature: domain Description: YgfZ Location: 86972-87872 bp Feature: gene Location: 89630-90949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89633-90209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89633-90209 bp Feature: domain Description: YkfC Location: 90407-90563 bp Feature: domain Description: YkfC Location: 904 07-90563 bp Feature: domain Description: HNH Note: nucleases Location: 90746-90884 bp Feature: domain Description: HNH Note: nucleases Location: 9074 6-90884 bp Feature: gene Location: 91025-91279 bp Feature: domain Description: SdhE Location: 91031-91271 bp Feature: domain Description: SdhE Location: 91031-91271 bp Feature: gene Location: 91418-91612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)