myRT

myRT report for GCA_005863945.1_ASM586394v1

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Seq: VAVU01000012.1 (35908 bp)
Overview 1 RT 1: 1768-9079 bp Neighborhood of RT #1 [1768, 10134] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1768-2907 bp Feature: domain Description: AAA_21 Location: 1840-1909 bp Feature: domain Description: AAA_21 Location: 1 840-1 909 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: domain Description: AAA_21 Location: 2383-271 3 bp Feature: gene Location: 2907-3464 bp Feature: gene Location: 3461-6481 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4427 bp Feature: gene Location: 6478-8259 bp Feature: domain Description: YeeA Location: 7345-8125 bp Feature: domain Description: YeeA Location: 7345-81 25 bp Feature: gene Location: 8263-10134 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Feature: domain Description: DUF262 Location: 831 1 -9079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: VAVU01000040.1 (43760 bp)
Overview 1 RT 1: 34987-39283 bp Neighborhood of RT #1 [34987, 39366] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34987-35166 bp Feature: gene Location: 35350-35748 bp Feature: gene Location: 35898-37166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36111-36768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36111-36768 bp Feature: domain Description: GIIM Note: maturase Location: 36846-37068 bp Feature: domain Description: GIIM Note: maturase Location: 36846-37068 bp Feature: gene Location: 37555-38196 bp Feature: domain Description: DUF772 Location: 37705-37900 bp Feature: domain Description: DUF772 Location: 37705-37900 bp Feature: gene Location: 38539-39366 bp Feature: domain Description: ABC_phnC Location: 38569-39283 bp Feature: domain Description: ABC_phnC Location: 38569-392 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: VAVU01000024.1 (132542 bp)
Overview 1 RT 1: 86025-91611 bp Neighborhood of RT #1 [86025, 91611] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 86025-86861 bp Feature: domain Description: HDOD Location: 86028-86856 bp Feature: domain Description: HDOD Location: 86028-86856 bp Feature: gene Location: 86962-87906 bp Feature: domain Description: YgfZ Location: 86971-87871 bp Feature: domain Description: YgfZ Location: 86971-87871 bp Feature: gene Location: 89629-90948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89632-90208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8963 2-90208 bp Feature: domain Description: YkfC Location: 90406-90562 bp Feature: domain Description: YkfC Location: 90406-90562 bp Feature: domain Description: HNH Note: nucleases Location: 90745-90883 bp Feature: domain Description: HNH Note: nucleases Location: 90745-90883 bp Feature: gene Location: 91024-91278 bp Feature: domain Description: SdhE Location: 91030-91270 bp Feature: domain Description: SdhE Location: 9103 0-91270 bp Feature: gene Location: 91417-91611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: VAVU01000045.1 (141460 bp)
Overview 1 RT 1: 56336-67069 bp 2 RT 2: 83327-92147 bp Neighborhood of RT #1 [56336, 67071] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83327, 92176] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56336-56551 bp Feature: domain Description: NERD Location: 56363-56486 bp Feature: domain Description: NERD Location: 56363-564 86 bp Feature: gene Location: 56764-57885 bp Feature: domain Description: COG3177 Location: 56782-57874 bp Feature: domain Description: COG3177 Location: 56782-57874 bp Feature: gene Location: 58608-60293 bp Feature: domain Description: RVT_N Location: 58665-58905 bp Feature: domain Description: RVT_N Location: 58665-58905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58953-59589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58953-59589 bp Feature: domain Description: GIIM Note: maturase Location: 59643-59874 bp Feature: domain Description: GIIM Note: maturase Location: 5964 3-59874 bp Feature: domain Description: HNH Note: nucleases Location: 60126-60264 bp Feature: domain Description: HNH Note: nucleases Location: 60126-60264 bp Feature: gene Location: 61374-65111 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61482-62139 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 614 82-62139 bp Feature: domain Description: PRK09776 Location: 62352-62823 bp Feature: domain Description: PRK09776 Location: 62352-62823 bp Feature: domain Description: PAS Location: 62880-63405 bp Feature: domain Description: PAS Location: 62880-634 05 bp Feature: domain Description: PRK10060 Location: 63417-65061 bp Feature: domain Description: PRK10060 Location: 634 17-65061 bp Feature: gene Location: 65218-67071 bp Feature: domain Description: PRK05658 Location: 65230-67069 bp Feature: domain Description: PRK05658 Location: 65230-67069 bp Feature: gene Location: 83327-84541 bp Feature: domain Description: PRK10770 Location: 83339-84533 bp Feature: domain Description: PRK10770 Location: 83339-84 533 bp Feature: gene Location: 84600-87371 bp Feature: domain Description: LptD Location: 84795-87357 bp Feature: domain Description: LptD Location: 84 795-87357 bp Feature: gene Location: 87504-89216 bp Feature: domain Description: RVT_N Location: 87561-87804 bp Feature: domain Description: RVT_N Location: 87561-87804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87849-88485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8784 9-884 85 bp Feature: domain Description: YkfC Location: 88695-88845 bp Feature: domain Description: YkfC Location: 88695-8884 5 bp Feature: domain Description: HNH Note: nucleases Location: 89022-89160 bp Feature: domain Description: HNH Note: nucleases Location: 89022-89160 bp Feature: gene Location: 90489-91505 bp Feature: domain Description: COG3178 Location: 90492-91491 bp Feature: domain Description: COG3178 Location: 904 92-914 91 bp Feature: gene Location: 91502-92176 bp Feature: domain Description: NTP_transferase_like_1 Location: 91508-92147 bp Feature: domain Description: NTP_transferase_like_1 Location: 91508-9214 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)