myRT

myRT report for GCA_005863975.1_ASM586397v1

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Seq: VAVV01000011.1 (43860 bp)
Overview 1 RT 1: 4526-8905 bp Neighborhood of RT #1 [4526, 8905] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4526-5353 bp Feature: domain Description: ABC_phnC Location: 4556-5270 bp Feature: domain Description: ABC_phnC Location: 4556-5270 bp Feature: gene Location: 5696-6337 bp Feature: domain Description: DUF772 Location: 5846-6041 bp Feature: domain Description: DUF772 Location: 5846-6041 bp Feature: gene Location: 6726-7994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6939-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6939-7596 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7896 bp Feature: domain Description: GIIM Note: maturase Location: 7674-7896 bp Feature: gene Location: 8144-8542 bp Feature: gene Location: 8726-8905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VAVV01000095.1 (35910 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF2 62 Location: 2 582 4-2 6592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 2 8518-2 92 98 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 992 4-30395 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_2 1 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_2 1 Location: 33618-33948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: VAVV01000026.1 (132412 bp)
Overview 1 RT 1: 40801-46382 bp Neighborhood of RT #1 [40801, 46387] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40801-40995 bp Feature: gene Location: 41134-41388 bp Feature: domain Description: SdhE Location: 41140-41380 bp Feature: domain Description: SdhE Location: 41140-413 80 bp Feature: gene Location: 41464-42783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41467-42043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41467-42043 bp Feature: domain Description: YkfC Location: 42241-42397 bp Feature: domain Description: YkfC Location: 42241-423 97 bp Feature: domain Description: HNH Note: nucleases Location: 42580-42718 bp Feature: domain Description: HNH Note: nucleases Location: 42580-42718 bp Feature: gene Location: 44506-45450 bp Feature: domain Description: YgfZ Location: 44515-45415 bp Feature: domain Description: YgfZ Location: 44515-45415 bp Feature: gene Location: 45551-46387 bp Feature: domain Description: HDOD Location: 45554-46382 bp Feature: domain Description: HDOD Location: 45554-463 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVV01000008.1 (230668 bp)
Overview 1 RT 1: 145543-156276 bp 2 RT 2: 172534-181354 bp Neighborhood of RT #1 [145543, 156278] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172534, 181383] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 145543-145758 bp Feature: domain Description: NERD Location: 145570-145693 bp Feature: domain Description: NERD Location: 14 5570-14 5693 bp Feature: gene Location: 145971-147092 bp Feature: domain Description: COG3177 Location: 145989-147081 bp Feature: domain Description: COG3177 Location: 14 5989-14 7081 bp Feature: gene Location: 147815-149500 bp Feature: domain Description: RVT_N Location: 147872-148112 bp Feature: domain Description: RVT_N Location: 14 7872-14 8112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148160-148796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 8160-14 8796 bp Feature: domain Description: GIIM Note: maturase Location: 148850-149081 bp Feature: domain Description: GIIM Note: maturase Location: 14 8850-14 9081 bp Feature: domain Description: HNH Note: nucleases Location: 149333-149471 bp Feature: domain Description: HNH Note: nucleases Location: 14 9333-14 94 71 bp Feature: gene Location: 150581-154318 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150689-151346 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150689-15134 6 bp Feature: domain Description: PRK09776 Location: 151559-152030 bp Feature: domain Description: PRK09776 Location: 151559-152030 bp Feature: domain Description: PAS Location: 152087-152612 bp Feature: domain Description: PAS Location: 152087-152612 bp Feature: domain Description: PRK10060 Location: 152624-154268 bp Feature: domain Description: PRK10060 Location: 152624 -154 268 bp Feature: gene Location: 154425-156278 bp Feature: domain Description: PRK05658 Location: 154437-156276 bp Feature: domain Description: PRK05658 Location: 154 4 37-156276 bp Feature: gene Location: 172534-173748 bp Feature: domain Description: PRK10770 Location: 172546-173740 bp Feature: domain Description: PRK10770 Location: 17254 6-17374 0 bp Feature: gene Location: 173807-176578 bp Feature: domain Description: LptD Location: 174002-176564 bp Feature: domain Description: LptD Location: 174 002-176564 bp Feature: gene Location: 176711-178423 bp Feature: domain Description: RVT_N Location: 176768-177011 bp Feature: domain Description: RVT_N Location: 176768-177011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177056-177692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177056-177692 bp Feature: domain Description: YkfC Location: 177902-178052 bp Feature: domain Description: YkfC Location: 177902-178052 bp Feature: domain Description: HNH Note: nucleases Location: 178229-178367 bp Feature: domain Description: HNH Note: nucleases Location: 178229-178367 bp Feature: gene Location: 179696-180712 bp Feature: domain Description: COG3178 Location: 179699-180698 bp Feature: domain Description: COG3178 Location: 179699-180698 bp Feature: gene Location: 180709-181383 bp Feature: domain Description: NTP_transferase_like_1 Location: 180715-181354 bp Feature: domain Description: NTP_transferase_like_1 Location: 180715-181354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)