myRT

myRT report for GCA_005864015.1_ASM586401v1

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Seq: VAVX01000067.1 (132543 bp)
Overview 1 RT 1: 40932-46513 bp Neighborhood of RT #1 [40932, 46518] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40932-41126 bp Feature: gene Location: 41265-41519 bp Feature: domain Description: SdhE Location: 41271-41511 bp Feature: domain Description: SdhE Location: 41 271 -41 51 1 bp Feature: gene Location: 41595-42914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41598-42174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 598-421 74 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: YkfC Location: 42372-42528 bp Feature: domain Description: HNH Note: nucleases Location: 42711-42849 bp Feature: domain Description: HNH Note: nucleases Location: 4271 1 -42849 bp Feature: gene Location: 44637-45581 bp Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: domain Description: YgfZ Location: 44646-45546 bp Feature: gene Location: 45682-46518 bp Feature: domain Description: HDOD Location: 45685-46513 bp Feature: domain Description: HDOD Location: 45685-4651 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: VAVX01000029.1 (141234 bp)
Overview 1 RT 1: 56109-66842 bp 2 RT 2: 83100-91920 bp Neighborhood of RT #1 [56109, 66844] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83100, 91949] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56109-56324 bp Feature: domain Description: NERD Location: 56136-56259 bp Feature: domain Description: NERD Location: 56136-562 59 bp Feature: gene Location: 56537-57658 bp Feature: domain Description: COG3177 Location: 56555-57647 bp Feature: domain Description: COG3177 Location: 56555-57647 bp Feature: gene Location: 58381-60066 bp Feature: domain Description: RVT_N Location: 58438-58678 bp Feature: domain Description: RVT_N Location: 58438-58678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58726-59362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872 6-59362 bp Feature: domain Description: GIIM Note: maturase Location: 59416-59647 bp Feature: domain Description: GIIM Note: maturase Location: 59416-59647 bp Feature: domain Description: HNH Note: nucleases Location: 59899-60037 bp Feature: domain Description: HNH Note: nucleases Location: 59899-60037 bp Feature: gene Location: 61147-64884 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61255-61912 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 612 55-61912 bp Feature: domain Description: PRK09776 Location: 62125-62596 bp Feature: domain Description: PRK09776 Location: 62 12 5-62 596 bp Feature: domain Description: PAS Location: 62653-63178 bp Feature: domain Description: PAS Location: 62 653-63178 bp Feature: domain Description: PRK10060 Location: 63190-64834 bp Feature: domain Description: PRK10060 Location: 63190-64834 bp Feature: gene Location: 64991-66844 bp Feature: domain Description: PRK05658 Location: 65003-66842 bp Feature: domain Description: PRK05658 Location: 65003-66842 bp Feature: gene Location: 83100-84314 bp Feature: domain Description: PRK10770 Location: 83112-84306 bp Feature: domain Description: PRK10770 Location: 83112 -84306 bp Feature: gene Location: 84373-87144 bp Feature: domain Description: LptD Location: 84568-87130 bp Feature: domain Description: LptD Location: 84568-87130 bp Feature: gene Location: 87277-88989 bp Feature: domain Description: RVT_N Location: 87334-87577 bp Feature: domain Description: RVT_N Location: 87334-87577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87622-88258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762 2 -882 58 bp Feature: domain Description: YkfC Location: 88468-88618 bp Feature: domain Description: YkfC Location: 88468-88618 bp Feature: domain Description: HNH Note: nucleases Location: 88795-88933 bp Feature: domain Description: HNH Note: nucleases Location: 88795-88933 bp Feature: gene Location: 90262-91278 bp Feature: domain Description: COG3178 Location: 90265-91264 bp Feature: domain Description: COG3178 Location: 902 65-912 64 bp Feature: gene Location: 91275-91949 bp Feature: domain Description: NTP_transferase_like_1 Location: 91281-91920 bp Feature: domain Description: NTP_transferase_like_1 Location: 912 81-9192 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VAVX01000111.1 (35909 bp)
Overview 1 RT 1: 25776-33948 bp Neighborhood of RT #1 [25776, 34142] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25776-27647 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: domain Description: DUF262 Location: 25824-26592 bp Feature: gene Location: 27651-29432 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: domain Description: YeeA Location: 28518-29298 bp Feature: gene Location: 29429-32449 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-30395 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29924-3 03 95 bp Feature: gene Location: 32446-33003 bp Feature: gene Location: 33003-34142 bp Feature: domain Description: AAA_21 Location: 33075-33144 bp Feature: domain Description: AAA_21 Location: 3 3 075-3 3 144 bp Feature: domain Description: AAA_21 Location: 33618-33948 bp Feature: domain Description: AAA_21 Location: 3 3 618-3 3 948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: VAVX01000006.1 (37881 bp)
Overview 1 RT 1: 3-2924 bp Neighborhood of RT #1 [3, 2924] RVT-GII GIIM Feature: gene Location: 3-209 bp Feature: gene Location: 745-2013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1915 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1915 bp Feature: gene Location: 2163-2561 bp Feature: gene Location: 2745-2924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)