myRT

myRT report for GCA_005877695.1_ASM587769v1

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Seq: VBOA01000148.1 (2067 bp)
Overview 1 RT 1: 522-768 bp Neighborhood of RT #1 [522, 839] RVT-CRISPR-like Feature: gene Location: 522-839 bp Ori: TLY45451.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 588-768 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 588-768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VBOA01000175.1 (1882 bp)
Overview 1 RT 1: 42-1404 bp Neighborhood of RT #1 [42, 1404] RVT-UNC Feature: gene Location: 42-381 bp Ori: TLY45188.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 84-360 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 84-360 bp Feature: gene Location: 469-1096 bp Feature: gene Location: 1210-1404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG1(RVT-UNC)

Seq: VBOA01000004.1 (6911 bp)
Overview 1 RT 1: 44-3727 bp Neighborhood of RT #1 [44, 4224] zf-CCHC retropepsin_like RVT-UNC RT_RNaseH_2 Integrase_H2C2 rve Feature: gene Location: 44-808 bp Ori: TLY48842.1 Feature: domain Description: zf-CCHC Location: 707-752 bp Feature: domain Description: zf-CCHC Location: 707-752 bp Feature: gene Location: 811-4224 bp Ori: TLY48843.1 Feature: domain Description: retropepsin_like Location: 1099-1360 bp Feature: domain Description: retropepsin_like Location: 1099-13 60 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2008-2179 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2008-2179 bp Feature: domain Description: RT_RNaseH_2 Location: 2407-2701 bp Feature: domain Description: RT_RNaseH_2 Location: 2407-2701 bp Feature: domain Description: Integrase_H2C2 Location: 3178-3352 bp Feature: domain Description: Integrase_H2C2 Location: 3 178-3 3 52 bp Feature: domain Description: rve Location: 3412-3727 bp Feature: domain Description: rve Location: 3 412-3 727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-CCHC (pfam00098), retropepsin_like (cd00303), RVT-UG15/RVT-UG17/RVT-UG26/RVT-UG11(RVT-UNC), RT_RNaseH_2 (pfam17919), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: VBOA01000134.1 (3258 bp)
Overview 1 RT 1: 1-2918 bp Neighborhood of RT #1 [1, 3226] Exo_endo_phos_2 RVT-CRISPR-like sialate_O-acetylesterase_like2 Feature: gene Location: 1-2618 bp Ori: TLY45582.1 Feature: domain Description: Exo_endo_phos_2 Location: 403-718 bp Feature: domain Description: Exo_endo_phos_2 Location: 4 03-718 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1585-2167 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1585-2167 bp Feature: gene Location: 2573-3226 bp Ori: TLY45583.1 Feature: domain Description: sialate_O-acetylesterase_like2 Location: 2624-2918 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 2624 -2918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-CRISPR, sialate_O-acetylesterase_like2 (cd01828)

Seq: VBOA01000193.1 (2171 bp)
Overview 1 RT 1: 82-1989 bp Neighborhood of RT #1 [82, 2171] RVT-UG26 Feature: gene Location: 82-882 bp Feature: gene Location: 1794-2171 bp Ori: TLY44982.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1842-1989 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1842-1989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26

Seq: VBOA01000017.1 (9758 bp)
Overview 1 RT 1: 1325-4043 bp Neighborhood of RT #1 [1325, 4555] retropepsin_like RVT-GII RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 1325-4555 bp Ori: TLY47028.1 Feature: domain Description: retropepsin_like Location: 1442-1718 bp Feature: domain Description: retropepsin_like Location: 1442-1718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2420-2579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2420-2579 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2870-3221 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2870-3221 bp Feature: domain Description: Integrase_H2C2 Location: 3494-3665 bp Feature: domain Description: Integrase_H2C2 Location: 3494-36 6 5 bp Feature: domain Description: rve Location: 3710-4043 bp Feature: domain Description: rve Location: 3710-4043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-GII, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: VBOA01000050.1 (2602 bp)
Overview 1 RT 1: 1-1570 bp Neighborhood of RT #1 [1, 1736] RVT-UNC Feature: gene Location: 1-1736 bp Ori: TLY46674.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 961-1570 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 961-157 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA/RVT-GII/RVT-CRISPR/RVT-DGRs(RVT-UNC)

Seq: VBOA01000058.1 (4101 bp)
Overview 1 RT 1: 344-2954 bp Neighborhood of RT #1 [344, 3556] retropepsin_like_LTR_2 RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 344-3556 bp Ori: TLY46627.1 Feature: domain Description: retropepsin_like_LTR_2 Location: 413-683 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 413-68 3 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1346-1493 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1346-1493 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1784-2153 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 178 4-2153 bp Feature: domain Description: Integrase_H2C2 Location: 2426-2585 bp Feature: domain Description: Integrase_H2C2 Location: 2426-258 5 bp Feature: domain Description: rve Location: 2636-2954 bp Feature: domain Description: rve Location: 2636-2954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_LTR_2 (cd05484), RVT-UG11/RVT-UG26/RVT-GII(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)