myRT

myRT report for GCA_005877885.1_ASM587788v1

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Seq: VCHY01000001.1 (582580 bp)
Overview 1 RT 1: 162962-167075 bp Neighborhood of RT #1 [162962, 167323] Por_Secre_tail RVT-GII GIIM DEDD_Tnp_IS110 COG3547 Feature: gene Location: 162962-163255 bp Feature: gene Location: 163340-164269 bp Feature: domain Description: Por_Secre_tail Location: 164063-164267 bp Feature: domain Description: Por_Secre_tail Location: 1 64063-1 64267 bp Feature: gene Location: 164515-165375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164518-164926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6451 8-1 64926 bp Feature: domain Description: GIIM Note: maturase Location: 164980-165187 bp Feature: domain Description: GIIM Note: maturase Location: 1 64980-1 651 87 bp Feature: gene Location: 165726-165929 bp Feature: gene Location: 166019-167323 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 166049-166472 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 66049-1 66472 bp Feature: domain Description: COG3547 Location: 166868-167075 bp Feature: domain Description: COG3547 Location: 1 66868-1 67075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Por_Secre_tail (TIGR04183), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase )

Seq: VCHY01000352.1 (519 bp)
Overview 1 RT 1: 2-308 bp Neighborhood of RT #1 [2, 517] RVT-UG11 Feature: gene Location: 2-517 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 188-308 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 188-308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VCHY01000004.1 (386971 bp)
Overview 1 RT 1: 207004-210400 bp Neighborhood of RT #1 [207004, 210426] RpoD RVT-GII RVT-GII PFLE_PFLC PFLE_PFLC Feature: gene Location: 207004-207864 bp Feature: domain Description: RpoD Location: 207031-207859 bp Feature: domain Description: RpoD Location: 20703 1-207859 bp Feature: gene Location: 208009-208188 bp Feature: gene Location: 208246-208410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208249-208408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208249-208408 bp Feature: gene Location: 208444-208611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208450-208579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208450-208579 bp Feature: gene Location: 209292-209432 bp Feature: gene Location: 209626-210426 bp Feature: domain Description: PFLE_PFLC Location: 209641-209761 bp Feature: domain Description: PFLE_PFLC Location: 209641-209761 bp Feature: domain Description: PFLE_PFLC Location: 209809-210400 bp Feature: domain Description: PFLE_PFLC Location: 209809-210400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoD (COG0568), RVT-GII, PFLE_PFLC (TIGR02494)

Seq: VCHY01000017.1 (139256 bp)
Overview 1 RT 1: 281-6485 bp Neighborhood of RT #1 [281, 6485] CBM_4_9 Lipase_GDSL_2 COG3666 DDE_Tnp_1 DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 281-2128 bp Feature: domain Description: CBM_4_9 Location: 401-743 bp Feature: domain Description: CBM_4 _9 Location: 4 01-74 3 bp Feature: domain Description: Lipase_GDSL_2 Location: 1370-1856 bp Feature: domain Description: Lipase_GDSL_2 Location: 1370-1856 bp Feature: gene Location: 2449-3945 bp Feature: domain Description: COG3666 Location: 2470-2896 bp Feature: domain Description: COG3666 Location: 24 70-2896 bp Feature: domain Description: DDE_Tnp_1 Location: 3175-3526 bp Feature: domain Description: DDE_Tnp_1 Location: 3175-3526 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3553-3925 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3553-3925 bp Feature: gene Location: 4070-5536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4445-5063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 4 5-5063 bp Feature: domain Description: GIIM Note: maturase Location: 5105-5309 bp Feature: domain Description: GIIM Note: maturase Location: 5105-5309 bp Feature: gene Location: 5508-5855 bp Feature: gene Location: 6264-6485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CBM_4_9 (pfam02018), Lipase_GDSL_2 (pfam13472), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)

Seq: VCHY01000062.1 (2524 bp)
Overview 1 RT 1: 381-2521 bp Neighborhood of RT #1 [381, 2521] RVT-UG25 RNase_HI_RT_Ty1 Feature: gene Location: 381-1709 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 705-840 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 705 -840 bp Feature: domain Description: RNase_HI_RT_Ty1 Location: 1245-1647 bp Feature: domain Description: RNase_HI_RT_Ty1 Location: 1245 -1647 bp Feature: gene Location: 2033-2521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG25, RNase_HI_RT_Ty1 (cd09272)

Seq: VCHY01000067.1 (2135 bp)
Overview 1 RT 1: 1-2132 bp Neighborhood of RT #1 [1, 2132] RVT-UNC RT_RNaseH_2 RVP_2 RT_LTR Feature: gene Location: 1-723 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 85-190 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 85-190 bp Feature: domain Description: RT_RNaseH_2 Location: 436-715 bp Feature: domain Description: RT_RNaseH_2 Location: 436 -715 bp Feature: gene Location: 745-1812 bp Feature: domain Description: RVP_2 Location: 823-1198 bp Feature: domain Description: RVP_2 Location: 823-1198 bp Feature: domain Description: RT_LTR Location: 1552-1810 bp Feature: domain Description: RT_LTR Location: 1552-1810 bp Feature: gene Location: 1893-2132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG16/RVT-UG20/RVT-UG21/RVT-UG26(RVT-UNC), RT_RNaseH_2 (pfam17919), RVP_2 (pfam08284), RT_LTR (cd01647)

Seq: VCHY01000273.1 (607 bp)
Overview 1 RT 1: 1-577 bp Neighborhood of RT #1 [1, 606] RVT-UG11 Feature: gene Location: 1-606 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 463-577 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 463-57 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VCHY01000014.1 (144272 bp)
Overview 1 RT 1: 180-5013 bp Neighborhood of RT #1 [180, 5027] QueG RVT-GII GIIM Coprogen_oxidas Feature: gene Location: 180-482 bp Feature: gene Location: 670-1380 bp Feature: domain Description: QueG Location: 973-1261 bp Feature: domain Description: QueG Location: 973-1261 bp Feature: gene Location: 2077-3477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2416-3034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2416-3034 bp Feature: domain Description: GIIM Note: maturase Location: 3085-3304 bp Feature: domain Description: GIIM Note: maturase Location: 308 5-3304 bp Feature: gene Location: 3478-3657 bp Feature: gene Location: 4122-5027 bp Feature: domain Description: Coprogen_oxidas Location: 4146-5013 bp Feature: domain Description: Coprogen_oxidas Location: 4146-5013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueG (COG1600), RVT-GII, GIIM (pfam08388), Coprogen_oxidas (pfam01218)