myRT

myRT report for GCA_005878055.1_ASM587805v1

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Seq: VBNM01000296.1 Gammaproteobacteria bacterium isolate GP_21 14_0919_02_20cm_scaffold_26098, whole genome shotgun sequence (3365 bp)
Overview 1 RT 1: 655-3311 bp Neighborhood of RT #1 [655, 3311] DUF488 RVT-GII GIIM Feature: gene Location: 655-852 bp Feature: gene Location: 859-1353 bp Feature: domain Description: DUF488 Location: 910-1237 bp Feature: domain Description: DUF488 Location: 91 0-1 237 bp Feature: gene Location: 1744-3048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032-2692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032-2692 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2968 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2968 bp Feature: gene Location: 3090-3311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF488 (pfam04343)

Seq: VBNM01000127.1 Gammaproteobacteria bacterium isolate GP_21 14_0919_02_20cm_scaffold_3488, whole genome shotgun sequence (20955 bp)
Overview 1 RT 1: 10111-13925 bp Neighborhood of RT #1 [10111, 14119] PHA02517 RVT-Retrons RVT-Retrons Trypsin_2 excise Feature: gene Location: 10111-10917 bp Feature: domain Description: PHA02517 Location: 10126-10909 bp Feature: domain Description: PHA02 517 Location: 1012 6-10909 bp Feature: gene Location: 11033-11293 bp Feature: gene Location: 11165-12433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11180-11384 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11180-11384 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11450-11543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11450-11543 bp Feature: domain Description: Trypsin_2 Location: 11927-12338 bp Feature: domain Description: Trypsin_2 Location: 1192 7-12 338 bp Feature: gene Location: 12517-13668 bp Feature: gene Location: 13766-14119 bp Feature: domain Description: excise Location: 13778-13925 bp Feature: domain Description: excise Location: 13778-1392 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, Trypsin_2 (pfam13365), excise (TIGR01764)