myRT

myRT report for GCA_005879655.1_ASM587965v1

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Seq: VBJK01000330.1 (4134 bp)

Associated domains:myRT LRR (smart00370), SCAD_SBCAD (cd01158), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VBJK01000204.1 (6537 bp)

Associated domains:myRT Integrase_H2C2 (pfam17921), rve (pfam00665), CD_CSD (cl28914), retropepsin_like (cd00303), RVT-UG11/RVT-G2Lb/RVT-DGRs/RVT-UG17(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Retrotrans_gag (pfam03732), zf-CCHC (pfam00098)

Seq: VBJK01000040.1 (5750 bp)

Associated domains:myRT R1-I-EN (cd09077), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), Rnase_HI_RT_non_LTR (cd09276)

Seq: VBJK01000069.1 (25714 bp)

Associated domains:myRT COG1926 (Predicted phosphoribosyltransferase ), PRK05261 (phosphoketolase), RVT-GII, HdrA (COG1148), Fer4 (pfam00037), PRK12771 (putative glutamate synthase (NADPH) small subunit; Provisional)

Seq: VBJK01000199.1 (3856 bp)

Associated domains:myRT INTN1_C_like (cd01185), ASD2 (pfam08687), RVT-GII

Seq: VBJK01000383.1 (3666 bp)

Associated domains:myRT Retrotrans_gag (pfam03732), retropepsin_like (cd00303), RVT-UG11/RVT-DGRs/RVT-UG20/RVT-UG26(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921)

Seq: VBJK01000400.1 (3423 bp)

Associated domains:myRT ZnF_C2HC (smart00343), retropepsin_like (cd00303), RVT-UG20/RVT-DGRs/RVT-UG26/RVT-UG11(RVT-UNC)

Seq: VBJK01000452.1 (5306 bp)

Associated domains:myRT retropepsin_like (cd00303), RVT-DGRs, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), MLVIN_C (pfam18697)

Seq: VBJK01000324.1 (2788 bp)

Associated domains:myRT RVT-UG11, RNase_HI_RT_Ty1 (cd09272)

Seq: VBJK01000137.1 (16906 bp)

Associated domains:myRT RVT_N (pfam13655), RVT-GII, Prok-JAB (pfam14464), ThiF (pfam00899)

Seq: VBJK01000011.1 (6019 bp)

Associated domains:myRT SgaA_N_like (cd07247), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Mrr_cat (pfam04471), DUF1129 (pfam06570)

Seq: VBJK01000128.1 (21419 bp)

Associated domains:myRT propeller_TolB (TIGR02800), T_den_put_tspse (TIGR01784), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_5 (pfam13546)

Seq: VBJK01000328.1 (5658 bp)

Associated domains:myRT DUF4939 (pfam16297), retropepsin_like (cd00303), RT_LTR (cd01647), RVT-UG11/RVT-DGRs/RVT-UG17/RVT-UG26(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_MarY1_POL_like (cd18975)

Seq: VBJK01000188.1 (4720 bp)

Associated domains:myRT DUF5372 (pfam17342), RVT-GII

Seq: VBJK01000254.1 (4893 bp)

Associated domains:myRT CD_CSD (cl28914), Retrotrans_gag (pfam03732), zf-CCHC (pfam00098), retropepsin_like (cd00303), PLN02547 (dUTP pyrophosphatase), RT_ZFREV_like (cd03715), RVT-UG11/RVT-UG17/RVT-UG21(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: VBJK01000379.1 (3314 bp)

Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-G2Lb/RVT-UG26/RVT-DGRs(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: VBJK01000046.1 (5738 bp)

Associated domains:myRT Gag_p24 (pfam00607), retropepsin_like (cd00303), RVT-UG17, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_POL_like (cd18979)

Seq: VBJK01000226.1 (28656 bp)

Associated domains:myRT COG5606 (Predicted DNA-binding protein, XRE-type HTH domain ), PcnB (COG0617), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), cas_cas6 (TIGR01877), FHA (smart00240), PrsW-protease (pfam13367)

Seq: VBJK01000273.1 (5017 bp)

Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), Rnase_HI_RT_non_LTR (cd09276)

Seq: VBJK01000432.1 (3876 bp)

Associated domains:myRT Retrotrans_gag (pfam03732), retropepsin_like (cd00303), RVT-DGRs, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921)

Seq: VBJK01000430.1 (5438 bp)

Associated domains:myRT RVT-UG11/RVT-UG26/RVT-G2Lb/RVT-DGRs(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_DDE_transposase_like (cd18978)