myRT

myRT report for GCA_005881495.1_ASM588149v1

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Seq: VBHI01000395.1 (5976 bp)
Overview 1 RT 1: 203-5582 bp Neighborhood of RT #1 [203, 5629] COG2452 InsQ RVT_N RVT-GII GIIM HNH DDE_3 COG3415 Feature: gene Location: 203-817 bp Feature: domain Description: COG2452 Location: 206-770 bp Feature: domain Description: COG2452 Location: 206-770 bp Feature: gene Location: 792-2300 bp Feature: domain Description: InsQ Location: 1419-2076 bp Feature: domain Description: InsQ Location: 1 41 9-2076 bp Feature: gene Location: 2807-4522 bp Feature: domain Description: RVT_N Location: 2867-3110 bp Feature: domain Description: RVT_N Location: 2867-31 1 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3164-3812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 64-381 2 bp Feature: domain Description: GIIM Note: maturase Location: 3911-4145 bp Feature: domain Description: GIIM Note: maturase Location: 391 1 -41 45 bp Feature: domain Description: HNH Note: nucleases Location: 4355-4490 bp Feature: domain Description: HNH Note: nucleases Location: 4355-4490 bp Feature: gene Location: 4623-5102 bp Feature: domain Description: DDE_3 Location: 4635-4974 bp Feature: domain Description: DDE_3 Location: 4635-4974 bp Feature: gene Location: 5129-5629 bp Feature: domain Description: COG3415 Location: 5147-5582 bp Feature: domain Description: COG341 5 Location: 51 47-5582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2452 (Predicted site-specific integrase-resolvase ), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), DDE_3 (pfam13358), COG3415 (Transposase )

Seq: VBHI01000121.1 (15667 bp)
Overview 1 RT 1: 12792-15664 bp Neighborhood of RT #1 [12792, 15664] KOG4768 RVT-GII Feature: gene Location: 12792-13076 bp Feature: gene Location: 13181-13792 bp Feature: domain Description: KOG4768 Location: 13196-13745 bp Feature: domain Description: KOG4768 Location: 13196-13745 bp Feature: gene Location: 13818-14996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14079-14778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14079-14778 bp Feature: gene Location: 15509-15664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII

Seq: VBHI01000157.1 (9158 bp)
Overview 1 RT 1: 3229-7998 bp Neighborhood of RT #1 [3229, 8036] Prok-E2_E Prok-JAB ThiF RVT_N RVT-GII GIIM cas4 Feature: gene Location: 3229-3915 bp Feature: domain Description: Prok-E2_E Location: 3544-3898 bp Feature: domain Description: Prok-E2_E Location: 3 544-3 898 bp Feature: gene Location: 3912-5303 bp Feature: domain Description: Prok-JAB Location: 3969-4263 bp Feature: domain Description: Prok-JAB Location: 3 969-4263 bp Feature: domain Description: ThiF Location: 4515-5286 bp Feature: domain Description: ThiF Location: 4515-5286 bp Feature: gene Location: 5592-7037 bp Feature: domain Description: RVT_N Location: 5667-5901 bp Feature: domain Description: RVT_N Location: 5667-5901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5961-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5961-6612 bp Feature: domain Description: GIIM Note: maturase Location: 6717-6948 bp Feature: domain Description: GIIM Note: maturase Location: 6717-6948 bp Feature: gene Location: 7080-7361 bp Feature: gene Location: 7419-8036 bp Feature: domain Description: cas4 Location: 7452-7998 bp Feature: domain Description: cas4 Location: 7452-7998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prok-E2_E (pfam14462), Prok-JAB (pfam14464), ThiF (pfam00899), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cas4 (TIGR00372)

Seq: VBHI01000405.1 (3674 bp)
Overview 1 RT 1: 48-3583 bp Neighborhood of RT #1 [48, 3672] RVT-GII PinE Zn_ribbon_recom RVT-GII Feature: gene Location: 48-575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-567 bp Feature: gene Location: 584-2632 bp Feature: domain Description: PinE Location: 629-1283 bp Feature: domain Description: PinE Location: 629-1283 bp Feature: domain Description: Zn_ribbon_recom Location: 1568-1727 bp Feature: domain Description: Zn_ribbon_recom Location: 1568-1727 bp Feature: gene Location: 3121-3672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3148-3583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314 8-3583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: VBHI01000276.1 (4933 bp)
Overview 1 RT 1: 324-4680 bp Neighborhood of RT #1 [324, 4694] PinE Zn_ribbon_recom RVT-GII GIIM HNH YhhI Y1_Tnp Feature: gene Location: 324-1139 bp Feature: gene Location: 1327-2394 bp Feature: domain Description: PinE Location: 1369-2050 bp Feature: domain Description: PinE Location: 1369-205 0 bp Feature: domain Description: Zn_ribbon_recom Location: 2311-2389 bp Feature: domain Description: Zn_ribbon_recom Location: 2311-2389 bp Feature: gene Location: 2774-4000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2780-3203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2780-3203 bp Feature: domain Description: GIIM Note: maturase Location: 3299-3533 bp Feature: domain Description: GIIM Note: maturase Location: 3299-35 33 bp Feature: domain Description: HNH Note: nucleases Location: 3749-3884 bp Feature: domain Description: HNH Note: nucleases Location: 3749-3884 bp Feature: gene Location: 4023-4214 bp Feature: domain Description: YhhI Location: 4029-4143 bp Feature: domain Description: YhhI Location: 4029-4143 bp Feature: gene Location: 4290-4694 bp Feature: domain Description: Y1_Tnp Location: 4335-4680 bp Feature: domain Description: Y1_Tnp Location: 4335 -4680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), HNH (pfam01844), YhhI (COG5433), Y1_Tnp (pfam01797)

Seq: VBHI01000342.1 (59018 bp)
Overview 1 RT 1: 15053-20064 bp Neighborhood of RT #1 [15053, 20072] DsbG RVT_N RVT-GII RVT-GII GIIM HNH COG2085 GATase1_Hsp31_like Feature: gene Location: 15053-15598 bp Feature: domain Description: DsbG Location: 15080-15590 bp Feature: domain Description: DsbG Location: 15080-15590 bp Feature: gene Location: 15793-16026 bp Feature: gene Location: 16717-17205 bp Feature: domain Description: RVT_N Location: 16750-16996 bp Feature: domain Description: RVT_N Location: 16 750-16 996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17038-17182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17038-17182 bp Feature: gene Location: 17243-18505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17249-17699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17249-176 99 bp Feature: domain Description: GIIM Note: maturase Location: 17804-18035 bp Feature: domain Description: GIIM Note: maturase Location: 17804-18035 bp Feature: domain Description: HNH Note: nucleases Location: 18242-18377 bp Feature: domain Description: HNH Note: nucleases Location: 18242-18377 bp Feature: gene Location: 18637-19287 bp Feature: domain Description: COG2085 Location: 18640-19189 bp Feature: domain Description: COG2085 Location: 186 40-19189 bp Feature: gene Location: 19326-20072 bp Feature: domain Description: GATase1_Hsp31_like Location: 19374-20064 bp Feature: domain Description: GATase1_Hsp31_like Location: 19374-2006 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DsbG (COG1651), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG2085 (Predicted dinucleotide-binding enzyme ), GATase1_Hsp31_like (cd03141)

Seq: VBHI01000254.1 (8439 bp)
Overview 1 RT 1: 4296-8374 bp Neighborhood of RT #1 [4296, 8385] Ere-like rve RVT-GII GIIM McrA RVT-GII Feature: gene Location: 4296-5762 bp Feature: domain Description: Ere-like Location: 4599-5730 bp Feature: domain Description: Ere-like Location: 4599-57 30 bp Feature: gene Location: 6162-6941 bp Feature: domain Description: rve Location: 6282-6501 bp Feature: domain Description: rve Location: 6282-6501 bp Feature: gene Location: 6931-7770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6934-6994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6934-6994 bp Feature: domain Description: GIIM Note: maturase Location: 7066-7270 bp Feature: domain Description: GIIM Note: maturase Location: 7 066-7 27 0 bp Feature: domain Description: McrA Location: 7522-7729 bp Feature: domain Description: McrA Location: 7 522-7 7 29 bp Feature: gene Location: 7774-8385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7777-8374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 7 7 -837 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ere-like (cd14728), rve (pfam00665), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: VBHI01000053.1 (7115 bp)
Overview 1 RT 1: 3202-7113 bp Neighborhood of RT #1 [3202, 7113] COG3934 RVT-GII Intron_maturas2 Feature: gene Location: 3202-4422 bp Feature: domain Description: COG3934 Location: 3217-4294 bp Feature: domain Description: COG3934 Location: 3217-4294 bp Feature: gene Location: 4337-4702 bp Feature: gene Location: 5027-6793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5288-6083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528 8 -608 3 bp Feature: domain Description: Intron_maturas2 Location: 6197-6407 bp Feature: domain Description: Intron_maturas2 Location: 6197-6407 bp Feature: gene Location: 6811-7113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3934 (Endo-1,4-beta-mannosidase ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VBHI01000273.1 (5158 bp)
Overview 1 RT 1: 208-5155 bp Neighborhood of RT #1 [208, 5155] RVT_N RVT-GII GIIM HNH RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 208-339 bp Feature: gene Location: 572-775 bp Feature: gene Location: 868-2667 bp Feature: domain Description: RVT_N Location: 928-1171 bp Feature: domain Description: RVT_N Location: 9 28-1171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225-1870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225-1870 bp Feature: domain Description: GIIM Note: maturase Location: 1975-2206 bp Feature: domain Description: GIIM Note: maturase Location: 19 75-2206 bp Feature: domain Description: HNH Note: nucleases Location: 2419-2557 bp Feature: domain Description: HNH Note: nucleases Location: 2419 -2557 bp Feature: gene Location: 3224-3814 bp Feature: domain Description: RVT_N Location: 3281-3527 bp Feature: domain Description: RVT_N Location: 3281-3527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3575-3755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3575-3755 bp Feature: gene Location: 3730-4974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3736-4177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3736-4177 bp Feature: domain Description: GIIM Note: maturase Location: 4273-4507 bp Feature: domain Description: GIIM Note: maturase Location: 4273-4507 bp Feature: domain Description: HNHc Note: nucleases Location: 4699-4843 bp Feature: domain Description: HNHc Note: nucleases Location: 469 9 -4843 bp Feature: gene Location: 5012-5155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507)

Seq: VBHI01000196.1 (3892 bp)
Overview 1 RT 1: 1-3890 bp Neighborhood of RT #1 [1, 3889] COG3464 RVT-GII Intron_maturas2 HNHc HTH_7 DDE_Tnp_ISL3 Feature: gene Location: 1-558 bp Feature: domain Description: COG3464 Location: 10-505 bp Feature: domain Description: COG3464 Location: 10 -505 bp Feature: gene Location: 1088-2902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349-2141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349-2141 bp Feature: domain Description: Intron_maturas2 Location: 2270-2486 bp Feature: domain Description: Intron_maturas2 Location: 2270-2486 bp Feature: domain Description: HNHc Note: nucleases Location: 2666-2843 bp Feature: domain Description: HNHc Note: nucleases Location: 2666-2843 bp Feature: gene Location: 2936-3889 bp Feature: domain Description: HTH_7 Location: 3164-3260 bp Feature: domain Description: HTH_7 Location: 3164-3260 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3614-3890 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3614-3890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_7 (pfam02796), DDE_Tnp_ISL3 (pfam01610)

Seq: VBHI01000289.1 (9200 bp)
Overview 1 RT 1: 1006-5416 bp Neighborhood of RT #1 [1006, 5523] RVT-GII Intron_maturas2 HNHc HTH_23 HTH_MerR-trunc Feature: gene Location: 1006-1140 bp Feature: gene Location: 1203-1412 bp Feature: gene Location: 1534-3363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795-2590 bp Feature: domain Description: Intron_maturas2 Location: 2707-2941 bp Feature: domain Description: Intron_maturas2 Location: 2707-2941 bp Feature: domain Description: HNHc Note: nucleases Location: 3112-3298 bp Feature: domain Description: HNHc Note: nucleases Location: 311 2-3298 bp Feature: gene Location: 3508-4371 bp Feature: domain Description: HTH_23 Location: 3916-4018 bp Feature: domain Description: HTH_23 Location: 3916-4018 bp Feature: gene Location: 4672-5523 bp Feature: domain Description: HTH_MerR-trunc Location: 5320-5416 bp Feature: domain Description: HTH_MerR-trunc Location: 5320-5416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_23 (pfam13384), HTH_MerR-trunc (cd04762)

Seq: VBHI01000058.1 (36917 bp)
Overview 1 RT 1: 3-5966 bp Neighborhood of RT #1 [3, 5992] RVT-GII Intron_maturas2 HNHc SpeE MM_CoA_mutase_ICM_like Feature: gene Location: 3-155 bp Feature: gene Location: 200-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-935 bp Feature: domain Description: Intron_maturas2 Location: 1043-1274 bp Feature: domain Description: Intron_maturas2 Location: 1043-12 74 bp Feature: domain Description: HNHc Note: nucleases Location: 1463-1628 bp Feature: domain Description: HNHc Note: nucleases Location: 1463-1628 bp Feature: gene Location: 1910-4084 bp Feature: domain Description: SpeE Location: 2783-3221 bp Feature: domain Description: SpeE Location: 2783-3221 bp Feature: gene Location: 4217-5992 bp Feature: domain Description: MM_CoA_mutase_ICM_like Location: 4361-5966 bp Feature: domain Description: MM_CoA_mutase_ICM_like Location: 4361-5966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SpeE (COG0421), MM_CoA_mutase_ICM_like (cd03680)