myRT

myRT report for GCA_005886815.1_ASM588681v1

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Seq: PNCS01000058.1 (13907 bp)
Overview 1 RT 1: 4377-11731 bp Neighborhood of RT #1 [4377, 11745] HsdM RMtype1_S_EcoJA65PI-TRD1-CR1_like RMtype1_S_EcoJA65PI-TRD1-CR1_like RVT-UG1 nitrilase_Rim1_like DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 4377-6044 bp Feature: domain Description: HsdM Location: 4383-5667 bp Feature: domain Description: HsdM Location: 4383-5667 bp Feature: gene Location: 6047-7444 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 6092-6635 bp Feature: domain Description: RMtype1 _S_EcoJA65PI-TRD1 -CR1 _like Location: 6092-6635 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 6719-7283 bp Feature: domain Description: RMtype1 _S_EcoJA65PI-TRD1 -CR1 _like Location: 671 9-7283 bp Feature: gene Location: 7475-9547 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8084-8579 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8084-8579 bp Feature: gene Location: 9640-11166 bp Feature: domain Description: nitrilase_Rim1_like Location: 10558-10876 bp Feature: domain Description: nitrilase_Rim1 _like Location: 1 0558-1 0876 bp Feature: gene Location: 11458-11745 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11464-11602 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 464-1 1 602 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11623-11731 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 623-1 1 731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_EcoJA65PI-TRD1-CR1_like (cd17256), RVT-UG1, nitrilase_Rim1_like (cd07574), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: PNCS01000194.1 (353 bp)
Overview 1 RT 1: 2-350 bp Neighborhood of RT #1 [2, 352] RVT-GII Feature: gene Location: 2-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PNCS01000018.1 (107716 bp)
Overview 1 RT 1: 104290-107631 bp Neighborhood of RT #1 [104290, 107631] KOG1234 RVT-Retrons Feature: gene Location: 104290-105612 bp Feature: domain Description: KOG1234 Location: 104518-105592 bp Feature: domain Description: KOG123 4 Location: 104518-105592 bp Feature: gene Location: 105758-106141 bp Feature: gene Location: 106142-107347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106292-106865 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106292-106865 bp Feature: gene Location: 107347-107631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1234 (KOG1234, ABC (ATP binding cassette) 1 protein ), RVT-Retrons

Seq: PNCS01000111.1 (7562 bp)
Overview 1 RT 1: 2431-5889 bp Neighborhood of RT #1 [2431, 6161] PHA02517 RVT-GII GIIM PHA02517 arc_metj Feature: gene Location: 2431-2871 bp Feature: domain Description: PHA02517 Location: 2494-2848 bp Feature: domain Description: PHA02517 Location: 24 94 -284 8 bp Feature: gene Location: 3064-3270 bp Feature: gene Location: 3510-5039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3783-4515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3783-4 515 bp Feature: domain Description: GIIM Note: maturase Location: 4629-4788 bp Feature: domain Description: GIIM Note: maturase Location: 4 629-4 788 bp Feature: gene Location: 5165-5608 bp Feature: domain Description: PHA02517 Location: 5168-5591 bp Feature: domain Description: PHA02517 Location: 5168-5591 bp Feature: gene Location: 5781-6161 bp Feature: domain Description: arc_metj Location: 5784-5889 bp Feature: domain Description: arc_metj Location: 5784 -5889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), arc_metj (LOAD_arc_metj)

Seq: PNCS01000193.1 (371 bp)
Overview 1 RT 1: 3-369 bp Neighborhood of RT #1 [3, 368] RVT-GII Feature: gene Location: 3-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PNCS01000042.1 (108110 bp)
Overview 1 RT 1: 1504-10174 bp Neighborhood of RT #1 [1504, 10174] RVT_N RVT-GII GIIM Feature: gene Location: 1504-3108 bp Feature: gene Location: 3648-7190 bp Feature: gene Location: 7829-9343 bp Feature: domain Description: RVT_N Location: 7919-8162 bp Feature: domain Description: RVT_N Location: 7919-816 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8207-8834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8207-8834 bp Feature: domain Description: GIIM Note: maturase Location: 8891-9119 bp Feature: domain Description: GIIM Note: maturase Location: 8891-9119 bp Feature: gene Location: 9726-9989 bp Feature: gene Location: 10034-10174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PNCS01000195.1 (591 bp)
Overview 1 RT 1: 1-469 bp Neighborhood of RT #1 [1, 588] RVT-GII Feature: gene Location: 1-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII