myRT

myRT report for GCA_005889575.1_ASM588957v1

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Seq: SWAD01000089.1 (17571 bp)
Overview 1 RT 1: 300-7247 bp Neighborhood of RT #1 [300, 7696] RVT-DGRs COG5635 COG5635 YfmG COG5635 COG5635 pfam03781 Feature: gene Location: 300-1364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 498-1146 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 498-1 1 46 bp Feature: gene Location: 1456-4752 bp Feature: domain Description: COG5635 Location: 2368-2473 bp Feature: domain Description: COG5635 Location: 2368-2473 bp Feature: domain Description: COG5635 Location: 2683-3244 bp Feature: domain Description: COG5635 Location: 2683-3244 bp Feature: domain Description: YfmG Location: 3979-4732 bp Feature: domain Description: YfmG Location: 3979-4732 bp Feature: gene Location: 4553-7696 bp Feature: domain Description: COG5635 Location: 4940-5045 bp Feature: domain Description: COG5635 Location: 4940-5045 bp Feature: domain Description: COG5635 Location: 5333-6248 bp Feature: domain Description: COG5635 Location: 5333-6248 bp Feature: domain Description: pfam03781 Location: 6545-7247 bp Feature: domain Description: pfam03781 Location: 6545-7247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: SWAD01000114.1 (13216 bp)
Overview 1 RT 1: 7139-9845 bp Neighborhood of RT #1 [7139, 9919] FGE-sulfatase RVT-DGRs Avd_like YfmG Feature: gene Location: 7139-7300 bp Feature: gene Location: 7470-8171 bp Feature: domain Description: FGE-sulfatase Location: 7485-8151 bp Feature: domain Description: FGE-sulfatase Location: 7485-8151 bp Feature: gene Location: 8218-9222 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8374-9022 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8374-902 2 bp Feature: gene Location: 9275-9637 bp Feature: domain Description: Avd_like Location: 9296-9608 bp Feature: domain Description: Avd_like Location: 92 96-9608 bp Feature: gene Location: 9710-9919 bp Feature: domain Description: YfmG Location: 9719-9845 bp Feature: domain Description: YfmG Location: 9719-9845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: SWAD01000240.1 (2294 bp)
Overview 1 RT 1: 2-2032 bp Neighborhood of RT #1 [2, 2032] RVT-GII GIIM Feature: gene Location: 2-211 bp Feature: gene Location: 447-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 8-13 98 bp Feature: domain Description: GIIM Note: maturase Location: 1467-1689 bp Feature: domain Description: GIIM Note: maturase Location: 1467-1689 bp Feature: gene Location: 1853-2032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWAD01000011.1 (62390 bp)
Overview 1 RT 1: 56192-61807 bp Neighborhood of RT #1 [56192, 62388] RVT-UG1 SF2_C_SNF Feature: gene Location: 56192-56626 bp Feature: gene Location: 56623-56928 bp Feature: gene Location: 57133-61074 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 57847-58336 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5784 7-58336 bp Feature: gene Location: 61108-62388 bp Feature: domain Description: SF2_C_SNF Location: 61303-61807 bp Feature: domain Description: SF2_C_SNF Location: 61303-61807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, SF2_C_SNF (cd18793)

Seq: SWAD01000031.1 (46226 bp)
Overview 1 RT 1: 41461-44551 bp Neighborhood of RT #1 [41461, 44607] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Cas2_I_II_III Feature: gene Location: 41461-41637 bp Feature: gene Location: 41728-42039 bp Feature: gene Location: 42053-44035 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42293-42902 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42293-42902 bp Feature: domain Description: Cas1_I-II-III Location: 43046-43997 bp Feature: domain Description: Cas1_I-II-III Location: 43046-43997 bp Feature: gene Location: 44042-44326 bp Feature: domain Description: Cas2_I_II_III Location: 44057-44261 bp Feature: domain Description: Cas2_I_II_III Location: 4405 7-44261 bp Feature: gene Location: 44416-44607 bp Feature: domain Description: Cas2_I_II_III Location: 44419-44551 bp Feature: domain Description: Cas2_I_II_III Location: 44419-445 5 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: SWAD01000080.1 (20939 bp)
Overview 1 RT 1: 10164-17409 bp Neighborhood of RT #1 [10164, 17540] PRK03735 PRK07609 YfmG RVT-DGRs YfmG MoxR Feature: gene Location: 10164-12080 bp Feature: domain Description: PRK03735 Location: 10257-10791 bp Feature: domain Description: PRK03735 Location: 10257-10791 bp Feature: domain Description: PRK07609 Location: 11058-12051 bp Feature: domain Description: PRK076 09 Location: 11058-12051 bp Feature: gene Location: 12204-13058 bp Feature: domain Description: YfmG Location: 12339-12972 bp Feature: domain Description: YfmG Location: 12339-12972 bp Feature: gene Location: 13055-13723 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13136-13373 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13136 -13373 bp Feature: gene Location: 13720-16533 bp Feature: domain Description: YfmG Location: 15694-16387 bp Feature: domain Description: YfmG Location: 156 94-16 387 bp Feature: gene Location: 16530-17540 bp Feature: domain Description: MoxR Location: 16617-17409 bp Feature: domain Description: MoxR Location: 16 6 17-17409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03735 (cytochrome b6; Provisional), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated), YfmG (COG1262), RVT-DGRs, MoxR (COG0714)

Seq: SWAD01000179.1 (5478 bp)
Overview 1 RT 1: 1829-5303 bp Neighborhood of RT #1 [1829, 5353] Phage_int_SAM_4 INT_IntI_C SGNH_arylesterase_like RVT-GII L-Ala-D-Glu_peptidase_like NPD_like Feature: gene Location: 1829-2746 bp Feature: domain Description: Phage_int_SAM_4 Location: 1835-2030 bp Feature: domain Description: Phage_int_SAM_4 Location: 1835-2030 bp Feature: domain Description: INT_IntI_C Location: 2072-2354 bp Feature: domain Description: INT_IntI_C Location: 207 2-2354 bp Feature: gene Location: 3013-3663 bp Feature: domain Description: SGNH_arylesterase_like Location: 3022-3637 bp Feature: domain Description: SGNH_arylesterase_like Location: 3022-3637 bp Feature: gene Location: 3734-4453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3743-4115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 43-4115 bp Feature: gene Location: 4472-4966 bp Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 4505-4820 bp Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 4505-4820 bp Feature: gene Location: 5081-5353 bp Feature: domain Description: NPD_like Location: 5108-5303 bp Feature: domain Description: NPD_like Location: 5108-5303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), SGNH_arylesterase_like (cd01839), RVT-GII, L-Ala-D-Glu_peptidase_like (cd14845), NPD_like (cd04730)

Seq: SWAD01000017.1 (58397 bp)
Overview 1 RT 1: 38734-40774 bp Neighborhood of RT #1 [38734, 40788] RVT-GII PRK06180 Feature: gene Location: 38734-38964 bp Feature: gene Location: 39021-39254 bp Feature: gene Location: 39264-39626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39507-39582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39507-3958 2 bp Feature: gene Location: 39682-39831 bp Feature: gene Location: 39946-40788 bp Feature: domain Description: PRK06180 Location: 39961-40774 bp Feature: domain Description: PRK0618 0 Location: 39961-40774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06180 (short chain dehydrogenase; Provisional)

Seq: SWAD01000234.1 (2511 bp)
Overview 1 RT 1: 227-1784 bp Neighborhood of RT #1 [227, 1801] BrnT_toxin RVT-GII RVT-GII PIN_VapC4-5_FitB-like Feature: gene Location: 227-520 bp Feature: domain Description: BrnT_toxin Location: 245-482 bp Feature: domain Description: BrnT_toxin Location: 245-482 bp Feature: gene Location: 830-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 71-1058 bp Feature: gene Location: 1127-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1133-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1133-1334 bp Feature: gene Location: 1361-1513 bp Feature: gene Location: 1586-1801 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1604-1784 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1604-1784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnT_toxin (pfam04365), RVT-GII, PIN_VapC4-5_FitB-like (cd18754)