myRT

myRT report for GCA_005889725.1_ASM588972v1

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Seq: VCKX01000029.1 (71647 bp)
Overview 1 RT 1: 5165-10452 bp Neighborhood of RT #1 [5165, 10452] IS285 COG3464 COG3464 RVT-GII GIIM RVT-GII HxlR Feature: gene Location: 5165-5629 bp Feature: domain Description: IS285 Location: 5231-5612 bp Feature: domain Description: IS285 Location: 5231 -561 2 bp Feature: gene Location: 5694-7070 bp Feature: domain Description: COG3464 Location: 5700-6249 bp Feature: domain Description: COG3464 Location: 5700-6249 bp Feature: domain Description: COG3464 Location: 6690-7068 bp Feature: domain Description: COG3464 Location: 6690-7068 bp Feature: gene Location: 7408-8256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7417-7825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 7-7825 bp Feature: domain Description: GIIM Note: maturase Location: 7894-8116 bp Feature: domain Description: GIIM Note: maturase Location: 7894-81 1 6 bp Feature: gene Location: 8253-8876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8598-8856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8598-8856 bp Feature: gene Location: 9494-9874 bp Feature: domain Description: HxlR Location: 9554-9863 bp Feature: domain Description: HxlR Location: 9554-9863 bp Feature: gene Location: 10219-10452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), COG3464 (Transposase ), RVT-GII, GIIM (pfam08388), HxlR (pfam01638)

Seq: VCKX01000355.1 (11493 bp)
Overview 1 RT 1: 3990-8055 bp Neighborhood of RT #1 [3990, 8055] Aes RVT-GII Intron_maturas2 RVT-GII Feature: gene Location: 3990-4952 bp Feature: domain Description: Aes Location: 4077-4935 bp Feature: domain Description: Aes Location: 4077-4935 bp Feature: gene Location: 5048-5521 bp Feature: gene Location: 5419-6690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5422-5968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 2 -5968 bp Feature: domain Description: Intron_maturas2 Location: 6085-6298 bp Feature: domain Description: Intron_maturas2 Location: 6085-62 98 bp Feature: gene Location: 6883-7020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6967-7012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6967-7012 bp Feature: gene Location: 7040-7603 bp Feature: gene Location: 7837-8055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VCKX01000620.1 (2156 bp)
Overview 1 RT 1: 561-1899 bp Neighborhood of RT #1 [561, 2042] RVT-GII GIIM Feature: gene Location: 561-2042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VCKX01000020.1 (78856 bp)
Overview 1 RT 1: 3640-7855 bp Neighborhood of RT #1 [3640, 7855] DDE_Tnp_IS66 RVT-GII group_II_RT_mat DDE_Tnp_1_6 Laminin_G_3 Feature: gene Location: 3640-4146 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3646-4126 bp Feature: domain Description: DDE_Tnp_IS66 Location: 364 6-4 126 bp Feature: gene Location: 4183-4320 bp Feature: gene Location: 4327-5568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4657-4825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 657-4 825 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4828-4912 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4 828-4 912 bp Feature: domain Description: DDE_Tnp_1_6 Location: 5113-5479 bp Feature: domain Description: DDE_Tnp_1_6 Location: 5113-54 79 bp Feature: gene Location: 6354-7004 bp Feature: domain Description: Laminin_G_3 Location: 6681-6954 bp Feature: domain Description: Laminin_G_3 Location: 6681-6954 bp Feature: gene Location: 7376-7855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_1_6 (pfam13751), Laminin_G_3 (pfam13385)