myRT

myRT report for GCA_005930695.1_ASM593069v1

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Seq: RXHV01000035.1 (50736 bp)
Overview 1 RT 1: 18784-23291 bp Neighborhood of RT #1 [18784, 23326] RVT-GII GIIM Prim_Zn_Ribbon Toprim_3 Feature: gene Location: 18784-19227 bp Feature: gene Location: 19239-19964 bp Feature: gene Location: 20144-21460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20429-21041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20429-21 041 bp Feature: domain Description: GIIM Note: maturase Location: 21098-21320 bp Feature: domain Description: GIIM Note: maturase Location: 21 098-21 320 bp Feature: gene Location: 21877-22023 bp Feature: gene Location: 22187-23326 bp Feature: domain Description: Prim_Zn_Ribbon Location: 22304-22436 bp Feature: domain Description: Prim_Zn_Ribbon Location: 22304-22436 bp Feature: domain Description: Toprim_3 Location: 22991-23291 bp Feature: domain Description: Toprim_3 Location: 22991 -23291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362)

Seq: RXHV01000003.1 (518942 bp)
Overview 1 RT 1: 252724-258244 bp Neighborhood of RT #1 [252724, 258244] Dcm RVT-DGRs Avd_like Feature: gene Location: 252724-253302 bp Feature: gene Location: 253766-255823 bp Feature: domain Description: Dcm Location: 253847-255779 bp Feature: domain Description: Dcm Location: 2 53847-2 55779 bp Feature: gene Location: 255870-257027 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 256119-256803 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 56119-2 56803 bp Feature: gene Location: 257240-257593 bp Feature: domain Description: Avd_like Location: 257267-257573 bp Feature: domain Description: Avd_like Location: 2 572 67-2 57573 bp Feature: gene Location: 257651-258244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376)

Seq: RXHV01000028.1 (83185 bp)
Overview 1 RT 1: 60698-64872 bp Neighborhood of RT #1 [60698, 64913] IS5 RVT_N RVT-GII GIIM COG3547 Feature: gene Location: 60698-60850 bp Feature: gene Location: 61271-61573 bp Feature: domain Description: IS5 Location: 61277-61469 bp Feature: domain Description: IS5 Location: 61277-61469 bp Feature: gene Location: 61682-63187 bp Feature: domain Description: RVT_N Location: 61760-61994 bp Feature: domain Description: RVT_N Location: 61760-61994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62039-62681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6203 9-62681 bp Feature: domain Description: GIIM Note: maturase Location: 62732-62966 bp Feature: domain Description: GIIM Note: maturase Location: 6273 2-62966 bp Feature: gene Location: 63228-63647 bp Feature: gene Location: 63897-64913 bp Feature: domain Description: COG3547 Location: 63915-64872 bp Feature: domain Description: COG3 547 Location: 63 915-64872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: RXHV01000051.1 (10995 bp)
Overview 1 RT 1: 8447-10740 bp Neighborhood of RT #1 [8447, 10937] INT_RitC_C_like DDE_Tnp_IS66 RVT_N RVT-GII Feature: gene Location: 8447-8770 bp Feature: domain Description: INT_RitC_C_like Location: 8450-8687 bp Feature: domain Description: INT_RitC_C_like Location: 84 50-8687 bp Feature: gene Location: 8934-9278 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8937-9258 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8937-9258 bp Feature: gene Location: 9834-10937 bp Feature: domain Description: RVT_N Location: 9879-10122 bp Feature: domain Description: RVT_N Location: 9879-10122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10167-10740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10167-1074 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII

Seq: RXHV01000057.1 (3534 bp)
Overview 1 RT 1: 2-1644 bp Neighborhood of RT #1 [2, 1649] RVT-GII MvaT_DBD Feature: gene Location: 2-334 bp Feature: gene Location: 389-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-5 60 bp Feature: gene Location: 617-1006 bp Feature: gene Location: 1284-1649 bp Feature: domain Description: MvaT_DBD Location: 1521-1644 bp Feature: domain Description: MvaT_DBD Location: 15 21-1644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MvaT_DBD (cl40688)

Seq: RXHV01000007.1 (238559 bp)
Overview 1 RT 1: 99676-105281 bp 2 RT 2: 167178-173082 bp Neighborhood of RT #1 [99676, 105281] Baculo_PEP_C MMR_HSR1 MMR_HSR1 DLP_2 DLP_helical RVT-CRISPR-like PRK00024 Neighborhood of RT #2 [167178, 173082] MFS_ProP GlxA RVT-GII Feature: gene Location: 99676-101886 bp Feature: domain Description: Baculo_PEP_C Location: 99703-99859 bp Feature: domain Description: Baculo_PEP_C Location: 99703-99859 bp Feature: domain Description: MMR_HSR1 Location: 99889-99979 bp Feature: domain Description: MMR_HSR1 Location: 99889-99979 bp Feature: domain Description: MMR_HSR1 Location: 100450-100657 bp Feature: domain Description: MMR_HSR1 Location: 100450-1006 57 bp Feature: gene Location: 101886-103592 bp Feature: domain Description: DLP_2 Location: 102183-102462 bp Feature: domain Description: DLP_2 Location: 102183-10246 2 bp Feature: domain Description: DLP_helical Location: 102528-103527 bp Feature: domain Description: DLP_helical Location: 102528-103527 bp Feature: gene Location: 103667-103801 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 103694-103775 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1036 94-103775 bp Feature: gene Location: 104095-104592 bp Feature: domain Description: PRK00024 Location: 104173-104587 bp Feature: domain Description: PRK00024 Location: 104173-104587 bp Feature: gene Location: 104640-105281 bp Feature: gene Location: 167178-168464 bp Feature: domain Description: MFS_ProP Location: 167217-168444 bp Feature: domain Description: MFS_ProP Location: 16 7217-16 8444 bp Feature: gene Location: 168551-169570 bp Feature: domain Description: GlxA Location: 168617-169556 bp Feature: domain Description: GlxA Location: 16 86 17-16 9556 bp Feature: gene Location: 170297-172063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170981-171671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170981-1716 71 bp Feature: gene Location: 172174-172341 bp Feature: gene Location: 172933-173082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Baculo_PEP_C (pfam04513), MMR_HSR1 (pfam01926), DLP_2 (cd09912), DLP_helical (pfam18709), RVT-CRISPR, PRK00024 (DNA repair protein RadC), MFS_ProP (cd17366), GlxA (COG4977), RVT-GII