myRT

myRT report for GCA_006124795.1_ASM612479v1

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Seq: PZOI01000091.1 (16307 bp)
Overview 1 RT 1: 12829-16088 bp Neighborhood of RT #1 [12829, 16306] PRK15438 PRK15057 RVT-GII GIIM Feature: gene Location: 12829-14037 bp Feature: domain Description: PRK15438 Location: 12856-14014 bp Feature: domain Description: PRK1 5438 Location: 1 2856-1 401 4 bp Feature: gene Location: 14180-15346 bp Feature: domain Description: PRK15057 Location: 14183-15344 bp Feature: domain Description: PRK1 5057 Location: 1 41 83-1 5344 bp Feature: gene Location: 15578-16306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15581-15827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5581 -1 5827 bp Feature: domain Description: GIIM Note: maturase Location: 15878-16088 bp Feature: domain Description: GIIM Note: maturase Location: 1 5878-1 6088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15438 (erythronate-4-phosphate dehydrogenase PdxB; Provisional), PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: PZOI01000042.1 (763 bp)
Overview 1 RT 1: 3-429 bp Neighborhood of RT #1 [3, 428] RVT-GII Feature: gene Location: 3-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153-42 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PZOI01000036.1 (1357 bp)
Overview 1 RT 1: 163-1136 bp Neighborhood of RT #1 [163, 1354] COG3308 RVT-GII GIIM Feature: gene Location: 163-594 bp Feature: domain Description: COG3308 Location: 190-529 bp Feature: domain Description: COG3 3 08 Location: 190-529 bp Feature: gene Location: 668-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-875 bp Feature: domain Description: GIIM Note: maturase Location: 926-1136 bp Feature: domain Description: GIIM Note: maturase Location: 926-113 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3308 (Uncharacterized membrane protein ), RVT-GII, GIIM (pfam08388)

Seq: PZOI01000068.1 (1455 bp)
Overview 1 RT 1: 397-1414 bp Neighborhood of RT #1 [397, 1452] RVT-GII GIIM Feature: gene Location: 397-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 7-1162 bp Feature: domain Description: GIIM Note: maturase Location: 1213-1414 bp Feature: domain Description: GIIM Note: maturase Location: 1213-14 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PZOI01000076.1 (82827 bp)
Overview 1 RT 1: 6934-11281 bp Neighborhood of RT #1 [6934, 11454] INT_C_like_1 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 6934-7476 bp Feature: domain Description: INT_C_like_1 Location: 6964-7384 bp Feature: domain Description: INT_C_like_1 Location: 6964-7384 bp Feature: gene Location: 7502-7717 bp Feature: gene Location: 8226-9149 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8328-8919 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8328-8919 bp Feature: gene Location: 9151-10779 bp Feature: domain Description: COG3950 Location: 9346-10723 bp Feature: domain Description: COG395 0 Location: 9346-10723 bp Feature: gene Location: 10786-11454 bp Feature: domain Description: TIGR02646 Location: 10885-11281 bp Feature: domain Description: TIGR02646 Location: 10885 -11281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: PZOI01000007.1 (53261 bp)
Overview 1 RT 1: 3-2015 bp Neighborhood of RT #1 [3, 2015] RVT-GII GIIM RNase_T2_prok Feature: gene Location: 3-662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-183 bp Feature: domain Description: GIIM Note: maturase Location: 234-444 bp Feature: domain Description: GIIM Note: maturase Location: 234-444 bp Feature: gene Location: 711-1721 bp Feature: domain Description: RNase_T2_prok Location: 1089-1689 bp Feature: domain Description: RNase_T2_prok Location: 1089-16 89 bp Feature: gene Location: 1866-2015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RNase_T2_prok (cd01062)

Seq: PZOI01000084.1 (5375 bp)
Overview 1 RT 1: 1-4767 bp Neighborhood of RT #1 [1, 4767] RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 RVT-GII GIIM OMP_b-brl OmpA Feature: gene Location: 1-708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-229 bp Feature: domain Description: GIIM Note: maturase Location: 280-490 bp Feature: domain Description: GIIM Note: maturase Location: 280-490 bp Feature: gene Location: 722-2050 bp Feature: domain Description: Nterm_IS4 Location: 794-1064 bp Feature: domain Description: Nterm_IS4 Location: 7 94-1064 bp Feature: domain Description: DDE_Tnp_1 Location: 1118-1781 bp Feature: domain Description: DDE_Tnp_1 Location: 1118-17 81 bp Feature: gene Location: 2319-3125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2337-2646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2337 -2646 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2898 bp Feature: domain Description: GIIM Note: maturase Location: 2697 -2898 bp Feature: gene Location: 3284-4291 bp Feature: domain Description: OMP_b-brl Location: 3302-3821 bp Feature: domain Description: OMP_b-brl Location: 3302-3821 bp Feature: domain Description: OmpA Location: 3902-4262 bp Feature: domain Description: OmpA Location: 3902-4262 bp Feature: gene Location: 4291-4767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), OMP_b-brl (pfam13505), OmpA (pfam00691)

Seq: PZOI01000046.1 (521 bp)
Overview 1 RT 1: 3-516 bp Neighborhood of RT #1 [3, 518] RVT-GII Feature: gene Location: 3-518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168-516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168 -516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PZOI01000089.1 (101230 bp)
Overview 1 RT 1: 2-1689 bp Neighborhood of RT #1 [2, 1703] RVT-GII GIIM COG4446 DUF2956 Feature: gene Location: 2-832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-353 bp Feature: domain Description: GIIM Note: maturase Location: 404-605 bp Feature: domain Description: GIIM Note: maturase Location: 404-605 bp Feature: gene Location: 909-1355 bp Feature: domain Description: COG4446 Location: 984-1326 bp Feature: domain Description: COG4446 Location: 9 84-1326 bp Feature: gene Location: 1368-1703 bp Feature: domain Description: DUF2956 Location: 1398-1689 bp Feature: domain Description: DUF29 56 Location: 139 8-1689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4446 (Uncharacterized conserved protein, DUF1499 family ), DUF2956 (pfam11169)

Seq: PZOI01000032.1 (1966 bp)
Overview 1 RT 1: 3-1747 bp Neighborhood of RT #1 [3, 1965] PRK05355 RVT-GII GIIM Feature: gene Location: 3-1076 bp Feature: domain Description: PRK05355 Location: 6-1077 bp Feature: domain Description: PRK05355 Location: 6-10 77 bp Feature: gene Location: 1267-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-1486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-1486 bp Feature: domain Description: GIIM Note: maturase Location: 1537-1747 bp Feature: domain Description: GIIM Note: maturase Location: 1537-1747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05355 (3-phosphoserine/phosphohydroxythreonine transaminase), RVT-GII, GIIM (pfam08388)