myRT

myRT report for GCA_006124835.1_ASM612483v1

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Seq: PZOH01000053.1 (923 bp)
Overview 1 RT 1: 2-887 bp Neighborhood of RT #1 [2, 922] RVT-GII GIIM Feature: gene Location: 2-922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-635 bp Feature: domain Description: GIIM Note: maturase Location: 686-887 bp Feature: domain Description: GIIM Note: maturase Location: 686-887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PZOH01000091.1 (2997 bp)
Overview 1 RT 1: 2-2655 bp Neighborhood of RT #1 [2, 2882] Big_2 Big_2 Big_2 OmpA_membrane OmpA RVT-GII GIIM Feature: gene Location: 2-910 bp Feature: domain Description: Big_2 Location: 179-374 bp Feature: domain Description: Big_2 Location: 179-374 bp Feature: domain Description: Big_2 Location: 419-635 bp Feature: domain Description: Big_2 Location: 419-635 bp Feature: domain Description: Big_2 Location: 680-902 bp Feature: domain Description: Big_2 Location: 680-902 bp Feature: gene Location: 910-1659 bp Feature: domain Description: OmpA_membrane Location: 943-1198 bp Feature: domain Description: OmpA_membrane Location: 943-1198 bp Feature: domain Description: OmpA Location: 1267-1630 bp Feature: domain Description: OmpA Location: 12 67-1630 bp Feature: gene Location: 2076-2882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094-2403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 094-2 403 bp Feature: domain Description: GIIM Note: maturase Location: 2454-2655 bp Feature: domain Description: GIIM Note: maturase Location: 2 454-2 655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_2 (pfam02368), OmpA_membrane (pfam01389), OmpA (pfam00691), RVT-GII, GIIM (pfam08388)

Seq: PZOH01000089.1 (35761 bp)
Overview 1 RT 1: 2-2020 bp Neighborhood of RT #1 [2, 2025] RVT-GII GIIM COG3308 PRK03767 Feature: gene Location: 2-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-425 bp Feature: domain Description: GIIM Note: maturase Location: 476-677 bp Feature: domain Description: GIIM Note: maturase Location: 476-677 bp Feature: gene Location: 978-1409 bp Feature: domain Description: COG3308 Location: 1005-1344 bp Feature: domain Description: COG3 3 08 Location: 1005-13 44 bp Feature: gene Location: 1450-2025 bp Feature: domain Description: PRK03767 Location: 1453-2020 bp Feature: domain Description: PRK03 767 Location: 1453 -2020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3308 (Uncharacterized membrane protein ), PRK03767 (NAD(P)H:quinone oxidoreductase; Provisional)

Seq: PZOH01000005.1 (121515 bp)
Overview 1 RT 1: 2-3812 bp Neighborhood of RT #1 [2, 3841] RVT-GII GIIM PRK05355 YddA Feature: gene Location: 2-676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 -197 bp Feature: domain Description: GIIM Note: maturase Location: 248-458 bp Feature: domain Description: GIIM Note: maturase Location: 24 8-4 58 bp Feature: gene Location: 867-1949 bp Feature: domain Description: PRK05355 Location: 870-1944 bp Feature: domain Description: PRK05355 Location: 870-194 4 bp Feature: gene Location: 2093-3841 bp Feature: domain Description: YddA Location: 2114-3812 bp Feature: domain Description: YddA Location: 2114 -3812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK05355 (3-phosphoserine/phosphohydroxythreonine transaminase), YddA (COG4178)

Seq: PZOH01000054.1 (568 bp)
Overview 1 RT 1: 2-566 bp Neighborhood of RT #1 [2, 565] RVT-GII Feature: gene Location: 2-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161-566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161-5 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PZOH01000095.1 (390561 bp)
Overview 1 RT 1: 378971-383399 bp Neighborhood of RT #1 [378971, 383491] TIGR02646 COG3950 RVT-Retrons INT_C_like_1 Feature: gene Location: 378971-379639 bp Feature: domain Description: TIGR02646 Location: 379070-379466 bp Feature: domain Description: TIGR026 46 Location: 379070-37946 6 bp Feature: gene Location: 379646-381274 bp Feature: domain Description: COG3950 Location: 379841-381218 bp Feature: domain Description: COG3950 Location: 379841-381218 bp Feature: gene Location: 381276-382199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 381378-381969 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 381378-38196 9 bp Feature: gene Location: 382708-382923 bp Feature: gene Location: 382949-383491 bp Feature: domain Description: INT_C_like_1 Location: 382979-383399 bp Feature: domain Description: INT_C_like_1 Location: 382979-383399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, INT_C_like_1 (cd01184)

Seq: PZOH01000006.1 (99669 bp)
Overview 1 RT 1: 98060-99450 bp Neighborhood of RT #1 [98060, 99668] DUF2956 COG4446 RVT-GII GIIM Feature: gene Location: 98060-98395 bp Feature: domain Description: DUF2956 Location: 98090-98381 bp Feature: domain Description: DUF2956 Location: 98090-98381 bp Feature: gene Location: 98408-98854 bp Feature: domain Description: COG4446 Location: 98483-98825 bp Feature: domain Description: COG4446 Location: 98483-98825 bp Feature: gene Location: 98931-99668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98934-99189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98934-99189 bp Feature: domain Description: GIIM Note: maturase Location: 99240-99450 bp Feature: domain Description: GIIM Note: maturase Location: 99240-99450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2956 (pfam11169), COG4446 (Uncharacterized conserved protein, DUF1499 family ), RVT-GII, GIIM (pfam08388)

Seq: PZOH01000013.1 (53632 bp)
Overview 1 RT 1: 2-2077 bp Neighborhood of RT #1 [2, 2077] RVT-GII GIIM RNase_T2_prok Feature: gene Location: 2-724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-245 bp Feature: domain Description: GIIM Note: maturase Location: 296-506 bp Feature: domain Description: GIIM Note: maturase Location: 296-506 bp Feature: gene Location: 773-1783 bp Feature: domain Description: RNase_T2_prok Location: 1151-1751 bp Feature: domain Description: RNase_T2_prok Location: 1151-1751 bp Feature: gene Location: 1928-2077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RNase_T2_prok (cd01062)

Seq: PZOH01000029.1 (11366 bp)
Overview 1 RT 1: 9141-11145 bp Neighborhood of RT #1 [9141, 11363] dapE_proteo DUF2897 RVT-GII GIIM Feature: gene Location: 9141-10274 bp Feature: domain Description: dapE_proteo Location: 9162-10263 bp Feature: domain Description: dapE_proteo Location: 9 162-10263 bp Feature: gene Location: 10354-10566 bp Feature: domain Description: DUF2897 Location: 10363-10504 bp Feature: domain Description: DUF289 7 Location: 10363-10504 bp Feature: gene Location: 10593-11363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10596-10884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059 6-10884 bp Feature: domain Description: GIIM Note: maturase Location: 10935-11145 bp Feature: domain Description: GIIM Note: maturase Location: 109 35-11145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dapE_proteo (TIGR01246), DUF2897 (pfam11446), RVT-GII, GIIM (pfam08388)