myRT

myRT report for GCA_006124915.1_ASM612491v1

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Seq: PZOJ01000101.1 (121527 bp)
Overview 1 RT 1: 117466-121297 bp Neighborhood of RT #1 [117466, 121524] YddA PRK05355 RVT-GII GIIM Feature: gene Location: 117466-119214 bp Feature: domain Description: YddA Location: 117487-119185 bp Feature: domain Description: YddA Location: 1 1 7487-1 1 91 85 bp Feature: gene Location: 119358-120440 bp Feature: domain Description: PRK05355 Location: 119361-120435 bp Feature: domain Description: PRK05355 Location: 1 1 9361 -1 20435 bp Feature: gene Location: 120631-121524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120634-121045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20634-1 21 045 bp Feature: domain Description: GIIM Note: maturase Location: 121096-121297 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 096-1 21 297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YddA (COG4178), PRK05355 (3-phosphoserine/phosphohydroxythreonine transaminase), RVT-GII, GIIM (pfam08388)

Seq: PZOJ01000084.1 (72258 bp)
Overview 1 RT 1: 6792-11139 bp Neighborhood of RT #1 [6792, 11312] INT_C_like_1 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 6792-7334 bp Feature: domain Description: INT_C_like_1 Location: 6822-7242 bp Feature: domain Description: INT_C_like_1 Location: 682 2 -72 42 bp Feature: gene Location: 7360-7575 bp Feature: gene Location: 8084-9007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8186-8777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8186-8777 bp Feature: gene Location: 9009-10637 bp Feature: domain Description: COG3950 Location: 9204-10581 bp Feature: domain Description: COG3950 Location: 92 04-10581 bp Feature: gene Location: 10644-11312 bp Feature: domain Description: TIGR02646 Location: 10743-11139 bp Feature: domain Description: TIGR02 646 Location: 10743-11139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_1 (cd01184), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: PZOJ01000028.1 (4608 bp)
Overview 1 RT 1: 1197-4387 bp Neighborhood of RT #1 [1197, 4605] PRK15438 PRK15057 RVT-GII GIIM Feature: gene Location: 1197-2405 bp Feature: domain Description: PRK15438 Location: 1224-2382 bp Feature: domain Description: PRK1543 8 Location: 1224-23 82 bp Feature: gene Location: 2548-3714 bp Feature: domain Description: PRK15057 Location: 2551-3712 bp Feature: domain Description: PRK15057 Location: 2551-3 712 bp Feature: gene Location: 3946-4605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952-4126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 952-4126 bp Feature: domain Description: GIIM Note: maturase Location: 4177-4387 bp Feature: domain Description: GIIM Note: maturase Location: 4177-43 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15438 (erythronate-4-phosphate dehydrogenase PdxB; Provisional), PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: PZOJ01000039.1 (2161 bp)
Overview 1 RT 1: 1-1942 bp Neighborhood of RT #1 [1, 2160] MFS_MMR_MDR_like LysR RVT-GII GIIM Feature: gene Location: 1-396 bp Feature: domain Description: MFS_MMR_MDR_like Location: 79-394 bp Feature: domain Description: MFS_MMR_MDR_like Location: 79-394 bp Feature: gene Location: 480-1424 bp Feature: domain Description: LysR Location: 537-1299 bp Feature: domain Description: LysR Location: 537-1299 bp Feature: gene Location: 1537-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1543-1681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 3-1681 bp Feature: domain Description: GIIM Note: maturase Location: 1732-1942 bp Feature: domain Description: GIIM Note: maturase Location: 1732-194 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), LysR (COG0583), RVT-GII, GIIM (pfam08388)

Seq: PZOJ01000110.1 (1517 bp)
Overview 1 RT 1: 2-1019 bp Neighborhood of RT #1 [2, 1135] RVT-GII GIIM Feature: gene Location: 2-1135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152-767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 2-767 bp Feature: domain Description: GIIM Note: maturase Location: 818-1019 bp Feature: domain Description: GIIM Note: maturase Location: 818-1019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PZOJ01000099.1 (2376 bp)
Overview 1 RT 1: 2-2370 bp Neighborhood of RT #1 [2, 2375] RVT-GII GIIM OMP_b-brl OmpA Big_2 Big_2 Feature: gene Location: 2-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-329 bp Feature: domain Description: GIIM Note: maturase Location: 380-554 bp Feature: domain Description: GIIM Note: maturase Location: 380-554 bp Feature: gene Location: 721-1728 bp Feature: domain Description: OMP_b-brl Location: 739-1258 bp Feature: domain Description: OMP_b-brl Location: 739-1258 bp Feature: domain Description: OmpA Location: 1339-1699 bp Feature: domain Description: OmpA Location: 1339-16 99 bp Feature: gene Location: 1728-2375 bp Feature: domain Description: Big_2 Location: 1905-2100 bp Feature: domain Description: Big_2 Location: 1905-2100 bp Feature: domain Description: Big_2 Location: 2145-2370 bp Feature: domain Description: Big_2 Location: 2145-2370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), OMP_b-brl (pfam13505), OmpA (pfam00691), Big_2 (pfam02368)