myRT

myRT report for GCA_006148905.1_ASM614890v1

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Seq: VBUO01000001.1 Bacteroides dorei strain P8wE9, whole genome shotgun sequence (5661728 bp)
Overview 1 RT 1: 728257-731465 bp 2 RT 2: 4269633-4274514 bp 3 RT 3: 4307671-4317114 bp 4 RT 4: 4821943-4825143 bp 5 RT 5: 5111088-5116360 bp Neighborhood of RT #1 [728257, 731465] RVT-UG27 Neighborhood of RT #2 [4269633, 4274514] COG2865 Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #3 [4307671, 4317114] Laminin_G_3 Laminin_G_3 RVT-DGRs Neighborhood of RT #4 [4821943, 4825143] Gp49 HTH_XRE RVT-DGRs Neighborhood of RT #5 [5111088, 5116386] ArdC RVT-UG15 ComFC Feature: gene Location: 728257-728535 bp Feature: gene Location: 728565-728831 bp Feature: gene Location: 728881-730143 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 729073-729709 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 729073-729709 bp Feature: gene Location: 730136-730804 bp Feature: gene Location: 730818-731465 bp Feature: gene Location: 4269633-4271069 bp Feature: domain Description: COG2865 Location: 4269636-4271058 bp Feature: domain Description: COG2865 Location: 4269636-4271 058 bp Feature: gene Location: 4271150-4272004 bp Feature: domain Description: Toprim_2 Location: 4271702-4271981 bp Feature: domain Description: Toprim_2 Location: 4271 702-4271 981 bp Feature: gene Location: 4271976-4273784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4272240-4273062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4272240-4273062 bp Feature: domain Description: Intron_maturas2 Location: 4273131-4273440 bp Feature: domain Description: Intron_maturas2 Location: 42731 31 -4273440 bp Feature: gene Location: 4274073-4274216 bp Feature: gene Location: 4274332-4274514 bp Feature: gene Location: 4307671-4314390 bp Feature: domain Description: Laminin_G_3 Location: 4309114-4309192 bp Feature: domain Description: Laminin_G_3 Location: 43091 1 4-43091 92 bp Feature: domain Description: Laminin_G_3 Location: 4309843-4310269 bp Feature: domain Description: Laminin_G_3 Location: 4309843-431 0269 bp Feature: gene Location: 4314634-4314804 bp Feature: gene Location: 4314906-4316210 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4315119-4315713 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 431 51 1 9-431 571 3 bp Feature: gene Location: 4316207-4316692 bp Feature: gene Location: 4316872-4317114 bp Feature: gene Location: 4821943-4822287 bp Feature: domain Description: Gp49 Location: 4821997-4822255 bp Feature: domain Description: Gp49 Location: 4821 997-4822255 bp Feature: gene Location: 4822292-4822603 bp Feature: domain Description: HTH_XRE Location: 4822406-4822559 bp Feature: domain Description: HTH_XRE Location: 4822406-4822559 bp Feature: gene Location: 4822850-4824340 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4823243-4823840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4823243-4823840 bp Feature: gene Location: 4824408-4824914 bp Feature: gene Location: 4824898-4825143 bp Feature: gene Location: 5111088-5111756 bp Feature: gene Location: 5111823-5112800 bp Feature: domain Description: ArdC Location: 5111838-5112747 bp Feature: domain Description: ArdC Location: 51 1 1 838-51 1 2747 bp Feature: gene Location: 5113360-5114883 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 5113786-5114185 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 51 1 3786-51 1 41 85 bp Feature: gene Location: 5115107-5115244 bp Feature: gene Location: 5115445-5116386 bp Feature: domain Description: ComFC Location: 5115931-5116360 bp Feature: domain Description: ComFC Location: 51 1 5931 -51 1 6360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, COG2865 (Predicted transcriptional regulator, contains HTH domain ), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), Laminin_G_3 (pfam13385), RVT-DGRs, Gp49 (pfam05973), HTH_XRE (smart00530), ArdC (COG4227)
RVT-UG15, ComFC (COG1040)