myRT

myRT report for GCA_006151725.2_ASM615172v2

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Seq: VDCU02000001.1 Chitinimonas sp. BJB300 1, whole genome shotgun sequence (1092595 bp)
Overview 1 RT 1: 91642-96760 bp 2 RT 2: 156731-161525 bp Neighborhood of RT #1 [91642, 96792] aceK xerD RVT-GII GIIM rplS Neighborhood of RT #2 [156731, 161533] PRK05920 AIM24 RVT-GII GIIM tolC Feature: gene Location: 91642-93405 bp Feature: domain Description: aceK Location: 91669-93379 bp Feature: domain Description: aceK Location: 91 669-93379 bp Feature: gene Location: 93467-94441 bp Feature: domain Description: xerD Location: 93497-94439 bp Feature: domain Description: xerD Location: 93497-94439 bp Feature: gene Location: 94602-95969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94935-95550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94935-95550 bp Feature: domain Description: GIIM Note: maturase Location: 95607-95817 bp Feature: domain Description: GIIM Note: maturase Location: 95607-9581 7 bp Feature: gene Location: 96172-96354 bp Feature: gene Location: 96412-96792 bp Feature: domain Description: rplS Location: 96415-96760 bp Feature: domain Description: rplS Location: 9641 5-96760 bp Feature: gene Location: 156731-157357 bp Feature: domain Description: PRK05920 Location: 156746-157343 bp Feature: domain Description: PRK05920 Location: 1 56746-1 57343 bp Feature: gene Location: 157464-158285 bp Feature: domain Description: AIM24 Location: 157506-158205 bp Feature: domain Description: AIM24 Location: 1 57506-1 58205 bp Feature: gene Location: 158388-159902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158868-159483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58868-1 59483 bp Feature: domain Description: GIIM Note: maturase Location: 159540-159750 bp Feature: domain Description: GIIM Note: maturase Location: 1 59540-1 59750 bp Feature: gene Location: 159808-160143 bp Feature: gene Location: 160196-161533 bp Feature: domain Description: tolC Location: 160211-161525 bp Feature: domain Description: tolC Location: 1 6021 1 -1 61 525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT aceK (PRK02946), xerD (PRK02436), RVT-GII, GIIM (pfam08388), rplS (PRK05338), PRK05920 (aromatic acid decarboxylase; Validated), AIM24 (pfam01987), tolC (PRK09465)

Seq: VDCU02000010.1 Chitinimonas sp. BJB300 10, whole genome shotgun sequence (124713 bp)
Overview 1 RT 1: 35154-40793 bp 2 RT 2: 51663-55241 bp Neighborhood of RT #1 [35154, 40906] IMPase RVT-GII GIIM TldD TldD Neighborhood of RT #2 [51663, 55243] PRK15000 RVT-GII GIIM COG3235 Feature: gene Location: 35154-36086 bp Feature: domain Description: IMPase Location: 35316-36033 bp Feature: domain Description: IMPase Location: 35316-36033 bp Feature: gene Location: 36132-36332 bp Feature: gene Location: 36535-37902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36868-37483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36868-37483 bp Feature: domain Description: GIIM Note: maturase Location: 37540-37750 bp Feature: domain Description: GIIM Note: maturase Location: 37540-37750 bp Feature: gene Location: 38142-39584 bp Feature: domain Description: TldD Location: 38175-39573 bp Feature: domain Description: TldD Location: 38175-39573 bp Feature: gene Location: 39584-40906 bp Feature: domain Description: TldD Location: 39944-40793 bp Feature: domain Description: TldD Location: 39944-40793 bp Feature: gene Location: 51663-52265 bp Feature: domain Description: PRK15000 Location: 51672-52260 bp Feature: domain Description: PRK15000 Location: 51672 -52 2 60 bp Feature: gene Location: 52310-52492 bp Feature: gene Location: 52695-54062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53028-53643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302 8-53643 bp Feature: domain Description: GIIM Note: maturase Location: 53700-53910 bp Feature: domain Description: GIIM Note: maturase Location: 53700-53910 bp Feature: gene Location: 54151-54492 bp Feature: gene Location: 54587-55243 bp Feature: domain Description: COG3235 Location: 54608-55241 bp Feature: domain Description: COG32 35 Location: 54608-552 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IMPase (cd01639), RVT-GII, GIIM (pfam08388), TldD (COG0312), PRK15000 (peroxiredoxin C), COG3235 (Uncharacterized membrane protein )

Seq: VDCU02000011.1 Chitinimonas sp. BJB300 11, whole genome shotgun sequence (114034 bp)
Overview 1 RT 1: 23357-29128 bp Neighborhood of RT #1 [23357, 29128] Peptidases_S8_3 fn3_6 RVT-GII GIIM Feature: gene Location: 23357-26467 bp Feature: domain Description: Peptidases_S8_3 Location: 23744-25259 bp Feature: domain Description: Peptidases_S8_3 Location: 23 744-25259 bp Feature: domain Description: fn3_6 Location: 25469-25745 bp Feature: domain Description: fn3 _6 Location: 25469-25745 bp Feature: gene Location: 26506-26739 bp Feature: gene Location: 26755-28308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27274-27889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27274-27889 bp Feature: domain Description: GIIM Note: maturase Location: 27946-28156 bp Feature: domain Description: GIIM Note: maturase Location: 27946-28156 bp Feature: gene Location: 28549-28941 bp Feature: gene Location: 28961-29128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_3 (cd04852), fn3_6 (pfam17766), RVT-GII, GIIM (pfam08388)

Seq: VDCU02000012.1 Chitinimonas sp. BJB300 12, whole genome shotgun sequence (107637 bp)
Overview 1 RT 1: 20435-26658 bp Neighborhood of RT #1 [20435, 26732] PLN02746 acid_phos_Burk RVT-GII GIIM CheY EAL Feature: gene Location: 20435-21406 bp Feature: domain Description: PLN02746 Location: 20504-21401 bp Feature: domain Description: PLN0274 6 Location: 20504 -214 01 bp Feature: gene Location: 21729-23408 bp Feature: domain Description: acid_phos_Burk Location: 21933-23403 bp Feature: domain Description: acid_phos_Burk Location: 21933-234 03 bp Feature: gene Location: 23680-25233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24199-24814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 199-24 814 bp Feature: domain Description: GIIM Note: maturase Location: 24871-25081 bp Feature: domain Description: GIIM Note: maturase Location: 24 871-25081 bp Feature: gene Location: 25249-25383 bp Feature: gene Location: 25497-26732 bp Feature: domain Description: CheY Location: 25524-25887 bp Feature: domain Description: CheY Location: 25524 -25887 bp Feature: domain Description: EAL Location: 25947-26658 bp Feature: domain Description: EAL Location: 2594 7-26658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02746 (hydroxymethylglutaryl-CoA lyase), acid_phos_Burk (TIGR03397), RVT-GII, GIIM (pfam08388), CheY (COG0784), EAL (smart00052)

Seq: VDCU02000002.1 Chitinimonas sp. BJB300 2, whole genome shotgun sequence (689177 bp)
Overview 1 RT 1: 452700-456287 bp 2 RT 2: 663663-669461 bp Neighborhood of RT #1 [452700, 456574] RpsT RVT-GII GIIM HTH_26 Ceramidase Neighborhood of RT #2 [663663, 669461] Pat_hypo_Ecoli_Z1214_like RVT-GII GIIM Tra8 Feature: gene Location: 452700-452963 bp Feature: domain Description: RpsT Location: 452703-452958 bp Feature: domain Description: RpsT Location: 45 2703-45 295 8 bp Feature: gene Location: 453092-453226 bp Feature: gene Location: 453319-454791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453757-454372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 375 7-45 4372 bp Feature: domain Description: GIIM Note: maturase Location: 454429-454639 bp Feature: domain Description: GIIM Note: maturase Location: 45 4429-45 4639 bp Feature: gene Location: 454906-455715 bp Feature: domain Description: HTH_26 Location: 454984-455146 bp Feature: domain Description: HTH_26 Location: 45 4984-45 5 146 bp Feature: gene Location: 455789-456574 bp Feature: domain Description: Ceramidase Location: 455972-456287 bp Feature: domain Description: Ceramidase Location: 45 5 972-45 6287 bp Feature: gene Location: 663663-664625 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 663792-664581 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 663792-6645 81 bp Feature: gene Location: 664795-664998 bp Feature: gene Location: 665196-666563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665529-666144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665 5 29-666144 bp Feature: domain Description: GIIM Note: maturase Location: 666201-666411 bp Feature: domain Description: GIIM Note: maturase Location: 666201-666411 bp Feature: gene Location: 666800-667789 bp Feature: domain Description: Tra8 Location: 666803-667745 bp Feature: domain Description: Tra8 Location: 666803-667745 bp Feature: gene Location: 667854-669461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpsT (COG0268), RVT-GII, GIIM (pfam08388), HTH_26 (pfam13443), Ceramidase (pfam05875), Pat_hypo_Ecoli_Z1214_like (cd07209), Tra8 (COG2826)

Seq: VDCU02000021.1 Chitinimonas sp. BJB300 21, whole genome shotgun sequence (62339 bp)
Overview 1 RT 1: 28334-34381 bp Neighborhood of RT #1 [28334, 34554] PIN_NicB-like RVT-GII HEPN_Apea Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 28334-28810 bp Feature: gene Location: 28838-29557 bp Feature: domain Description: PIN_NicB-like Location: 28868-29387 bp Feature: domain Description: PIN_NicB-like Location: 2886 8-29387 bp Feature: gene Location: 29834-31180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30101-30788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30101-30788 bp Feature: gene Location: 31764-32747 bp Feature: domain Description: HEPN_Apea Location: 32274-32685 bp Feature: domain Description: HEPN_Apea Location: 32274-326 85 bp Feature: gene Location: 33388-34554 bp Feature: domain Description: Zn_Tnp_IS91 Location: 33421-33694 bp Feature: domain Description: Zn_Tnp_IS91 Location: 33421-336 94 bp Feature: domain Description: Y2_Tnp Location: 33820-34381 bp Feature: domain Description: Y2_Tnp Location: 33820-34381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_NicB-like (cd18722), RVT-GII, HEPN_Apea (pfam18739), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: VDCU02000023.1 Chitinimonas sp. BJB300 23, whole genome shotgun sequence (58904 bp)
Overview 1 RT 1: 12513-15052 bp Neighborhood of RT #1 [12513, 15052] PHA02517 RVT-GII GIIM RVT-GII Feature: gene Location: 12513-12686 bp Feature: gene Location: 12750-13310 bp Feature: domain Description: PHA02517 Location: 12822-13293 bp Feature: domain Description: PHA02517 Location: 12822-13293 bp Feature: gene Location: 13321-14166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13327-13780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13327 -137 80 bp Feature: domain Description: GIIM Note: maturase Location: 13858-14086 bp Feature: domain Description: GIIM Note: maturase Location: 13858-14086 bp Feature: gene Location: 14170-14562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14368-14554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14368-14554 bp Feature: gene Location: 14569-14820 bp Feature: gene Location: 14924-15052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VDCU02000003.1 Chitinimonas sp. BJB300 3, whole genome shotgun sequence (343730 bp)
Overview 1 RT 1: 194011-198725 bp Neighborhood of RT #1 [194011, 198742] R_switched_Alx RVT-GII GIIM exosort_acyl PRK08223 Feature: gene Location: 194011-194961 bp Feature: domain Description: R_switched_Alx Location: 194026-194941 bp Feature: domain Description: R_switched_Alx Location: 194026-194941 bp Feature: gene Location: 195215-195349 bp Feature: gene Location: 195365-196918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195884-196499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1958 8 4-196499 bp Feature: domain Description: GIIM Note: maturase Location: 196556-196784 bp Feature: domain Description: GIIM Note: maturase Location: 196556-19678 4 bp Feature: gene Location: 197012-197782 bp Feature: domain Description: exosort_acyl Location: 197048-197732 bp Feature: domain Description: exosort_acyl Location: 197048 -197732 bp Feature: gene Location: 197858-198742 bp Feature: domain Description: PRK08223 Location: 197879-198725 bp Feature: domain Description: PRK08 223 Location: 1978 79-198 725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_Alx (TIGR03718), RVT-GII, GIIM (pfam08388), exosort_acyl (TIGR03694), PRK08223 (hypothetical protein; Validated)

Seq: VDCU02000030.1 Chitinimonas sp. BJB300 30, whole genome shotgun sequence (24085 bp)
Overview 1 RT 1: 18812-24046 bp Neighborhood of RT #1 [18812, 24051] Arabinose_bd AraC ERG3 RVT-GII GIIM Lgt Feature: gene Location: 18812-19924 bp Feature: domain Description: Arabinose_bd Location: 18965-19520 bp Feature: domain Description: Arabinose_bd Location: 189 65-19 520 bp Feature: domain Description: AraC Location: 19607-19901 bp Feature: domain Description: AraC Location: 19 607-19 9 01 bp Feature: gene Location: 20005-21288 bp Feature: domain Description: ERG3 Location: 20137-20707 bp Feature: domain Description: ERG3 Location: 20137-20707 bp Feature: gene Location: 21414-22781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21747-22362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21747-22362 bp Feature: domain Description: GIIM Note: maturase Location: 22419-22647 bp Feature: domain Description: GIIM Note: maturase Location: 22419 -22647 bp Feature: gene Location: 22984-23181 bp Feature: gene Location: 23221-24051 bp Feature: domain Description: Lgt Location: 23266-24046 bp Feature: domain Description: Lgt Location: 23266-24046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arabinose_bd (pfam12625), AraC (COG2207), ERG3 (COG3000), RVT-GII, GIIM (pfam08388), Lgt (COG0682)

Seq: VDCU02000037.1 Chitinimonas sp. BJB300 37, whole genome shotgun sequence (13653 bp)
Overview 1 RT 1: 713-4022 bp Neighborhood of RT #1 [713, 4022] RVT-GII GIIM Feature: gene Location: 713-1006 bp Feature: gene Location: 1214-1348 bp Feature: gene Location: 1504-2898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1858-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1858-2521 bp Feature: domain Description: GIIM Note: maturase Location: 2590-2806 bp Feature: domain Description: GIIM Note: maturase Location: 2590-2806 bp Feature: gene Location: 3166-3330 bp Feature: gene Location: 3381-4022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VDCU02000006.1 Chitinimonas sp. BJB300 6, whole genome shotgun sequence (205330 bp)
Overview 1 RT 1: 98612-101749 bp 2 RT 2: 170022-175068 bp 3 RT 3: 193238-196911 bp Neighborhood of RT #1 [98612, 101763] PRK06863 RVT-GII InsE PHA02517 Neighborhood of RT #2 [170022, 175085] pstA pstB RVT-GII GIIM glmM Neighborhood of RT #3 [193238, 197036] PRK10543 FkpA RVT-GII SmtA Feature: gene Location: 98612-99127 bp Feature: domain Description: PRK06863 Location: 98615-99125 bp Feature: domain Description: PRK06863 Location: 98615-99125 bp Feature: gene Location: 99230-99364 bp Feature: gene Location: 99514-100542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99847-100462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99847-100462 bp Feature: gene Location: 100547-100870 bp Feature: domain Description: InsE Location: 100562-100859 bp Feature: domain Description: InsE Location: 100562-100859 bp Feature: gene Location: 100867-101763 bp Feature: domain Description: PHA02517 Location: 100930-101749 bp Feature: domain Description: PHA02517 Location: 100930-101749 bp Feature: gene Location: 170022-170876 bp Feature: domain Description: pstA Location: 170034-170868 bp Feature: domain Description: pstA Location: 170034-170868 bp Feature: gene Location: 170998-171768 bp Feature: domain Description: pstB Location: 171007-171766 bp Feature: domain Description: pstB Location: 171007-171766 bp Feature: gene Location: 171868-173340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172306-172921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172306-172921 bp Feature: domain Description: GIIM Note: maturase Location: 172978-173188 bp Feature: domain Description: GIIM Note: maturase Location: 172978-173188 bp Feature: gene Location: 173433-173615 bp Feature: gene Location: 173667-175085 bp Feature: domain Description: glmM Location: 173736-175068 bp Feature: domain Description: glmM Location: 173736-175068 bp Feature: gene Location: 193238-193831 bp Feature: domain Description: PRK10543 Location: 193247-193826 bp Feature: domain Description: PRK10543 Location: 193247-193826 bp Feature: gene Location: 193971-194219 bp Feature: domain Description: FkpA Location: 193977-194202 bp Feature: domain Description: FkpA Location: 193977-194202 bp Feature: gene Location: 194317-195663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194584-195271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194584-195271 bp Feature: gene Location: 195974-196219 bp Feature: gene Location: 196329-197036 bp Feature: domain Description: SmtA Location: 196380-196911 bp Feature: domain Description: SmtA Location: 196380-196911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), PRK06863 (single-stranded DNA-binding protein; Provisional), RVT-GII, pstA (PRK11268), pstB (PRK10744), GIIM (pfam08388), glmM (TIGR01455), PRK10543 (superoxide dismutase ), FkpA (COG0545)
SmtA (COG0500)

Seq: VDCU02000008.1 Chitinimonas sp. BJB300 8, whole genome shotgun sequence (158156 bp)
Overview 1 RT 1: 126777-130768 bp Neighborhood of RT #1 [126777, 130788] MBL-B1 GIIM RVT-GII PRK10188 Feature: gene Location: 126777-127670 bp Feature: domain Description: MBL-B1 Location: 127026-127647 bp Feature: domain Description: MBL-B1 Location: 12 7026-12 7647 bp Feature: gene Location: 127986-128381 bp Feature: domain Description: GIIM Note: maturase Location: 128019-128229 bp Feature: domain Description: GIIM Note: maturase Location: 12 8019-12 8229 bp Feature: gene Location: 128371-129339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128704-129316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8704-12 9316 bp Feature: gene Location: 129542-129724 bp Feature: gene Location: 130075-130788 bp Feature: domain Description: PRK10188 Location: 130132-130768 bp Feature: domain Description: PRK10188 Location: 130132-130768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MBL-B1 (cd16285), GIIM (pfam08388), RVT-GII, PRK10188 (transcriptional regulator SdiA)

Seq: VDCU02000009.1 Chitinimonas sp. BJB300 9, whole genome shotgun sequence (129879 bp)
Overview 1 RT 1: 10853-17768 bp Neighborhood of RT #1 [10853, 17806] TypA RVT-GII GIIM fatty_acyltransferase_like fatty_acyltransferase_like Feature: gene Location: 10853-12670 bp Feature: domain Description: TypA Location: 10862-12656 bp Feature: domain Description: TypA Location: 10862-12656 bp Feature: gene Location: 12705-12908 bp Feature: gene Location: 12924-14477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13443-14058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 443-14058 bp Feature: domain Description: GIIM Note: maturase Location: 14115-14325 bp Feature: domain Description: GIIM Note: maturase Location: 14115-14325 bp Feature: gene Location: 15201-15962 bp Feature: domain Description: fatty_acyltransferase_like Location: 15714-15954 bp Feature: domain Description: fatty_acyltransferase_like Location: 15714-15954 bp Feature: gene Location: 16439-17806 bp Feature: domain Description: fatty_acyltransferase_like Location: 16961-17768 bp Feature: domain Description: fatty_acyltransferase_like Location: 16961-17768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TypA (COG1217), RVT-GII, GIIM (pfam08388), fatty_acyltransferase_like (cd01846)