myRT

myRT report for GCA_006175945.1_ASM617594v1

Download annotations/find similar RTs

Seq: VAJL01000001.1 Chryseobacterium sp. CA10 contig001, whole genome shotgun sequence (4727915 bp)
Overview 1 RT 1: 13400-17934 bp 2 RT 2: 173199-178542 bp 3 RT 3: 201032-205156 bp 4 RT 4: 4703421-4708556 bp Neighborhood of RT #1 [13400, 17934] RVT-UG5 nitrilase Neighborhood of RT #2 [173199, 178542] HTH_XRE RVT-UG5 nitrilase Neighborhood of RT #3 [201032, 205242] GIY-YIG RVT-UG28b HTH_Tnp_1 HTH_32 Tra5 Neighborhood of RT #4 [4703421, 4708556] HTH_19 VirE_N PriCT_2 RVT-UG28b GIY-YIG Feature: gene Location: 13400-14092 bp Feature: gene Location: 14355-14759 bp Feature: gene Location: 15194-16477 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15200-15386 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 5200-1 5386 bp Feature: gene Location: 16467-17543 bp Feature: domain Description: nitrilase Location: 16794-17448 bp Feature: domain Description: nitrilase Location: 1 6794-1 7448 bp Feature: gene Location: 17788-17934 bp Feature: gene Location: 173199-173708 bp Feature: domain Description: HTH_XRE Location: 173259-173424 bp Feature: domain Description: HTH_XRE Location: 1 73259-1 73424 bp Feature: gene Location: 174007-174699 bp Feature: gene Location: 174962-177085 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 175526-175994 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 75526-1 75994 bp Feature: gene Location: 177075-178151 bp Feature: domain Description: nitrilase Location: 177402-178056 bp Feature: domain Description: nitrilase Location: 1 77402-1 78056 bp Feature: gene Location: 178396-178542 bp Feature: gene Location: 201032-201742 bp Feature: gene Location: 201871-202368 bp Feature: domain Description: GIY-YIG Location: 202006-202291 bp Feature: domain Description: GIY-YIG Location: 202006-202291 bp Feature: gene Location: 202470-203738 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 202473-202935 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 202473-202935 bp Feature: gene Location: 203855-204238 bp Feature: domain Description: HTH_Tnp_1 Location: 203942-204185 bp Feature: domain Description: HTH_Tnp_1 Location: 203942-2041 85 bp Feature: gene Location: 204259-205242 bp Feature: domain Description: HTH_32 Location: 204364-204586 bp Feature: domain Description: HTH_32 Location: 204364-204586 bp Feature: domain Description: Tra5 Location: 204658-205156 bp Feature: domain Description: Tra5 Location: 204658-2051 56 bp Feature: gene Location: 4703421-4703828 bp Feature: domain Description: HTH_19 Location: 4703445-4703637 bp Feature: domain Description: HTH_1 9 Location: 4703445-4703637 bp Feature: gene Location: 4703988-4705001 bp Feature: domain Description: VirE_N Location: 4704153-4704528 bp Feature: domain Description: VirE_N Location: 47041 53-4704528 bp Feature: domain Description: PriCT_2 Location: 4704729-4704951 bp Feature: domain Description: PriCT_2 Location: 4704729-4704951 bp Feature: gene Location: 4705139-4707118 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4705592-4706315 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4705592-470631 5 bp Feature: gene Location: 4707220-4707717 bp Feature: domain Description: GIY-YIG Location: 4707355-4707640 bp Feature: domain Description: GIY-YIG Location: 4707355-4707640 bp Feature: gene Location: 4707846-4708556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), HTH_XRE (smart00530), GIY-YIG (pfam01541), RVT-UG28b, HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), Tra5 (COG2801), HTH_19 (pfam12844), VirE_N (pfam08800)
PriCT_2 (pfam08707)