myRT

myRT report for GCA_006218025.1_ASM621802v1

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Seq: VBWA01000088.1 Rhodocyclaceae bacterium isolate X1_MaxBin.001 scaffold_31481, whole genome shotgun sequence (2088 bp)
Overview 1 RT 1: 1-787 bp Neighborhood of RT #1 [1, 2088] RVT-UNC retropepsin_like Feature: gene Location: 1-428 bp Ori: TNC94905.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 49-196 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 49-1 96 bp Feature: gene Location: 478-2088 bp Ori: TNC94906.1 Feature: domain Description: retropepsin_like Location: 538-787 bp Feature: domain Description: retropepsin_like Location: 538-787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26/RVT-GII/RVT-UG11/RVT-UG3(RVT-UNC), retropepsin_like (cd00303)

Seq: VBWA01000071.1 Rhodocyclaceae bacterium isolate X1_MaxBin.001 scaffold_15559, whole genome shotgun sequence (4087 bp)
Overview 1 RT 1: 73-2647 bp Neighborhood of RT #1 [73, 3903] RVT-UNC Feature: gene Location: 73-1041 bp Feature: gene Location: 1220-1804 bp Feature: gene Location: 2212-3903 bp Ori: TNC95832.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 2362-2647 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 362 -2 647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-DGRs/RVT-UG23(RVT-UNC)

Seq: VBWA01000026.1 Rhodocyclaceae bacterium isolate X1_MaxBin.001 scaffold_299, whole genome shotgun sequence (50105 bp)
Overview 1 RT 1: 24272-28906 bp Neighborhood of RT #1 [24272, 28941] COG4453 RVT-UG7 Ub-RnfH rnfD Feature: gene Location: 24272-24556 bp Ori: TND00542.1 Feature: domain Description: COG4453 Location: 24287-24455 bp Feature: domain Description: COG4453 Location: 24287-24455 bp Feature: gene Location: 24915-25742 bp Feature: gene Location: 25821-27155 bp Ori: TND00544.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26199-26625 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 26199-26625 bp Feature: gene Location: 27562-27843 bp Ori: TND00545.1 Feature: domain Description: Ub-RnfH Location: 27565-27811 bp Feature: domain Description: Ub-RnfH Location: 27565-27811 bp Feature: gene Location: 27868-28941 bp Ori: TND00546.1 Feature: domain Description: rnfD Location: 27901-28906 bp Feature: domain Description: rnfD Location: 27901-28906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4453 (Uncharacterized conserved protein, DUF1778 family ), RVT-UG7, Ub-RnfH (pfam03658), rnfD (TIGR01946)

Seq: VBWA01000008.1 Rhodocyclaceae bacterium isolate X1_MaxBin.001 scaffold_62, whole genome shotgun sequence (231458 bp)
Overview 1 RT 1: 199488-207967 bp Neighborhood of RT #1 [199488, 208053] cobD PRK05664 RVT-GII GIIM NarQ PAS_8 PRK10060 Sigma54_DBD GIYc Feature: gene Location: 199488-200510 bp Ori: TND03888.1 Feature: domain Description: cobD Location: 199605-200493 bp Feature: domain Description: cobD Location: 199605-2004 93 bp Feature: gene Location: 200513-201544 bp Ori: TND03889.1 Feature: domain Description: PRK05664 Location: 200516-201503 bp Feature: domain Description: PRK05664 Location: 200516-201503 bp Feature: gene Location: 202062-203312 bp Ori: TND03890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202266-202923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202266-202923 bp Feature: domain Description: GIIM Note: maturase Location: 203004-203229 bp Feature: domain Description: GIIM Note: maturase Location: 203004 -203229 bp Feature: gene Location: 203852-206509 bp Ori: TND03891.1 Feature: domain Description: NarQ Location: 204053-204788 bp Feature: domain Description: NarQ Location: 204 053-204 788 bp Feature: domain Description: PAS_8 Location: 204860-205007 bp Feature: domain Description: PAS_8 Location: 204 860-205007 bp Feature: domain Description: PRK10060 Location: 205139-206489 bp Feature: domain Description: PRK10060 Location: 205139-2064 89 bp Feature: gene Location: 206812-208053 bp Ori: TND03892.1 Feature: domain Description: Sigma54_DBD Location: 207193-207643 bp Feature: domain Description: Sigma54 _DBD Location: 207193-20764 3 bp Feature: domain Description: GIYc Location: 207832-207967 bp Feature: domain Description: GIYc Location: 207832-207967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cobD (TIGR00380), PRK05664 (threonine-phosphate decarboxylase; Reviewed), RVT-GII, GIIM (pfam08388), NarQ (COG3850), PAS_8 (pfam13188), PRK10060 (cyclic di-GMP phosphodiesterase), Sigma54_DBD (pfam04552), GIYc (smart00465)