myRT

myRT report for GCA_006236915.1_ASM623691v1

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Seq: SQKA01000030.1 (5242 bp)
Overview 1 RT 1: 381-3569 bp Neighborhood of RT #1 [381, 3574] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 381-590 bp Feature: gene Location: 725-2626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 823 bp Feature: domain Description: Intron_maturas2 Location: 1937-2195 bp Feature: domain Description: Intron_maturas2 Location: 1 937-21 95 bp Feature: domain Description: HNHc Note: nucleases Location: 2369-2531 bp Feature: domain Description: HNHc Note: nucleases Location: 2369-2531 bp Feature: gene Location: 2821-3273 bp Feature: domain Description: PRK13732 Location: 2827-3271 bp Feature: domain Description: PRK1 3732 Location: 2827-3271 bp Feature: gene Location: 3341-3574 bp Feature: domain Description: DUF905 Location: 3371-3569 bp Feature: domain Description: DUF905 Location: 3371 -3569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: SQKA01000094.1 (4261 bp)
Overview 1 RT 1: 828-3955 bp Neighborhood of RT #1 [828, 3955] Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 828-1130 bp Feature: domain Description: Arm-DNA-bind_3 Location: 837-1089 bp Feature: domain Description: Arm-DNA-bind_3 Location: 837-1089 bp Feature: gene Location: 1314-1559 bp Feature: gene Location: 1585-2517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1687-2281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1687-2 2 81 bp Feature: gene Location: 2519-3505 bp Feature: gene Location: 3806-3955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons

Seq: SQKA01000149.1 (7085 bp)
Overview 1 RT 1: 1-4736 bp Neighborhood of RT #1 [1, 4762] RVT-UG3 RVT-UG8 PBP2_CrgA_like_5 Feature: gene Location: 1-129 bp Feature: gene Location: 277-477 bp Feature: gene Location: 524-1801 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 812-1307 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 812-13 07 bp Feature: gene Location: 1792-3810 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2365-2818 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 23 65-2818 bp Feature: gene Location: 4033-4188 bp Feature: gene Location: 4352-4762 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4424-4736 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4424-473 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT-UG8, PBP2_CrgA_like_5 (cd08474)

Seq: SQKA01000104.1 (1812 bp)
Overview 1 RT 1: 121-1811 bp Neighborhood of RT #1 [121, 1811] RVT-GII GIIM Feature: gene Location: 121-1644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394-1126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394 -1126 bp Feature: domain Description: GIIM Note: maturase Location: 1201-1399 bp Feature: domain Description: GIIM Note: maturase Location: 1201-1399 bp Feature: gene Location: 1668-1811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)